Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq4 212 9e-50 seq5 93.3 6e-14 seq11 84.2 3e-11 >seq4 Length=26741765 Score = 212 bits (234), Expect = 9e-50 Identities = 289/401 (72%), Gaps = 2/401 (0%) Strand=Plus/Minus Query 215634 AGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCAC 215693 |||||||||| || || | ||||| | |||||||| |||||| || || || | Sbjct 188884 AGTGGGAACTGAGTTCCATCTG-GGTATACGTCCTTGGATTACTGTTGCATATTCAGCTC 188826 Query 215694 CTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTG 215753 |||| | ||||| || || ||| | | || || | ||||| || |||||||| Sbjct 188825 CTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTG 188766 Query 215754 ATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGC 215813 ||| |||||| | ||||| ||| | || ||||||| ||| |||| |||||||| |||| Sbjct 188765 ATGGTATGCCTTTAGGAATATCTTGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGC 188706 Query 215814 ACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCAT 215873 | ||||| || ||||| ||||| |||||||||||||| |||||||| || | ||||| Sbjct 188705 ATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTATGCGGTTCCC 188646 Query 215874 TGTTC-TCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAG 215932 | ||| ||| ||||| ||||| | || || ||| | | |||| || || ||||| Sbjct 188645 TATTCAAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGTTCAGGGAAACCACTGAA 188586 Query 215933 CAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTA 215992 | |||||| || | ||||||| || || |||||||| || || || || || || Sbjct 188585 AACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTG 188526 Query 215993 GCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGC 216033 || || || ||||| ||||| || | ||||||||||| || Sbjct 188525 GCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGC 188485 Score = 188 bits (208), Expect = 1e-42 Identities = 263/369 (71%), Gaps = 0/369 (0%) Strand=Plus/Plus Query 215918 AGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAGGAA 215977 || || || ||||| | |||||| || | ||||||| || || |||||||| || Sbjct 12116216 AGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAG 12116275 Query 215978 ACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATCT 216037 || || || || || || || || ||||| ||||| || | ||||||||||| || | Sbjct 12116276 ACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGT 12116335 Query 216038 TTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTGG 216097 || |||||||| | | | ||||||||| | || || | ||||| | | || ||| Sbjct 12116336 TTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGG 12116395 Query 216098 GCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAG 216157 ||||| | ||| | |||||||| ||||| || ||||| ||||| |||||||| Sbjct 12116396 TTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAA 12116455 Query 216158 TCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCA 216217 ||||| || || ||| |||||| ||||||||| || | | ||| | || Sbjct 12116456 TCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCT 12116515 Query 216218 GGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTGGCT 216277 ||||||||||||||||||||||| ||||| |||||||||||||| ||||| | ||| Sbjct 12116516 AATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCT 12116575 Query 216278 GCTGCTGAA 216286 ||| |||| Sbjct 12116576 GCTCTTGAA 12116584 >seq5 Length=38039368 Score = 93.3 bits (102), Expect = 6e-14 Identities = 106/141 (75%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 216119 ACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGT 216178 |||||||| ||||| || ||||| ||||| |||||||| ||||| || || ||| Sbjct 16640569 ACTATGGCTTTCAATCTAAACGGGTTCAATTTCAACCA-TCTGTAGTTGATAGCCAAGGT 16640511 Query 216179 AAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATG 216238 |||||| ||||||||| || | | ||| | ||| |||| ||||||||||||| Sbjct 16640510 CGCGTTATTTATACTTGGGCTGATATCATCAACCGTGCAAATCTTGCTATGGAAGTAATG 16640451 Query 216239 CACGAGCGTAACGCTCACAAC 216259 ||||| ||||| |||||| || Sbjct 16640450 CACGAACGTAATGCTCACCAC 16640430 >seq11 Length=27185770 Score = 84.2 bits (92), Expect = 3e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 216221 CTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTGGCTGCT 216280 ||||||||||||||||||||||| ||||| |||||||||||||| ||||| | |||||| Sbjct 25910898 CTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 25910839 Query 216281 GCTGAA 216286 |||| Sbjct 25910838 CTTGAA 25910833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745081488237760