Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq4 262 5e-65 seq1 102 1e-16 seq11 86.0 8e-12 >seq4 Length=26741765 Score = 262 bits (290), Expect = 5e-65 Identities = 256/330 (78%), Gaps = 0/330 (0%) Strand=Plus/Plus Query 182451 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTATAACATCGTTGCAGCCCATGGCTACTTC 182510 ||||||| || |||||||| |||||||| ||||| || || || || ||||| || || Sbjct 12116249 GGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTT 12116308 Query 182511 GGTCGTTTGATCTTCCAATACGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 182570 || || || ||||||||||| || || |||||||| ||||| || ||||||||| | Sbjct 12116309 GGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTG 12116368 Query 182571 GCTGCATGGCCTGTTGTTGGAATCTGGTTCACCGCACTTGGTGTCTCCACGATGGCATTC 182630 ||||| |||||||| || || || |||||||| || | ||| | || ||||| ||| Sbjct 12116369 GCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTC 12116428 Query 182631 AACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTCCTTAAC 182690 || || ||||| ||||| |||||||| || | ||||| | || ||||| || |||| Sbjct 12116429 AATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAAT 12116488 Query 182691 ACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAAC 182750 |||||||| ||| | | ||||||||| ||||||||||||||| ||||| || ||||| Sbjct 12116489 ACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAAT 12116548 Query 182751 GCACACAACTTCCCACTAGATCTTGCTGCT 182780 || ||||||||||| ||||| || |||||| Sbjct 12116549 GCTCACAACTTCCCTCTAGACCTAGCTGCT 12116578 Score = 242 bits (268), Expect = 5e-59 Identities = 297/403 (74%), Gaps = 2/403 (0%) Strand=Plus/Minus Query 182132 TGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGC 182191 |||||||||||| || | || ||||| ||||| ||||| ||| ||||| || || Sbjct 188886 TGAGTGGGAACTGAGTTCCATCTG-GGTATACGTCCTTGGATTACTGTTGCATATTCAGC 188828 Query 182192 TCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGGTCAAGGTTCGTTCTC 182251 ||| || || || || | ||||| ||||| | || ||| | |||||||| ||||| Sbjct 188827 TCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTC 188768 Query 182252 CGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTTGGTTTTCCAAGCTGA 182311 |||| ||||| | ||||| || | || ||||||| |||| | || ||||| || || Sbjct 188767 TGATGGTATGCCTTTAGGAATATCTTGTACTTTCAACTTTATGATTGTATTCCAGGCAGA 188708 Query 182312 GCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGGTGTATTCGGTGGTTC 182371 ||| ||||| ||||||||||| || |||||||| |||||||| |||||||| | ||||| Sbjct 188707 GCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTATGCGGTTC 188648 Query 182372 ACTGTT-TAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTG 182430 || || ||||| ||||| ||||||||||| || ||| | || | || || |||| Sbjct 188647 CCTATTCAAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGTTCAGGGAAACCACTG 188588 Query 182431 AGCAAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTATAACATCG 182490 | | || || || | ||||||| || |||||||| |||||||| ||||| || | Sbjct 188587 AAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTG 188528 Query 182491 TTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGC 182533 | || || ||||| || || || || || ||||||||||| || Sbjct 188527 TGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGC 188485 >seq1 Length=46529941 Score = 102 bits (112), Expect = 1e-16 Identities = 134/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 183193 GATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCTT 183252 || |||||| | | | || || ||||| ||||| || |||||||| || | ||| || Sbjct 26428800 GACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGCCTATTGCTTTTT 26428741 Query 183253 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 183312 || ||||||| | || | || |||||| |||| || ||| ||||||| || |||| Sbjct 26428740 CCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 26428681 Query 183313 TATACCCATGGACTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTT-ACGGCAGCTGT 183371 |||||||||||| | || ||||||| | |||||| || |||||| || ||||| || Sbjct 26428680 TATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA-TTTCTTAACCGCAGCAGT 26428622 Query 183372 CTC 183374 || Sbjct 26428621 TTC 26428619 >seq11 Length=27185770 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 182709 AACCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTA 182768 ||||||||| ||||||||||||||| ||||| || ||||| || ||||||||||| ||| Sbjct 25910910 AACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTA 25910851 Query 182769 GATCTTGCTGCT 182780 || || |||||| Sbjct 25910850 GACCTAGCTGCT 25910839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611695908245600