Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq4 246 3e-60 seq5 109 6e-19 seq11 86.0 7e-12 >seq4 Length=26741765 Score = 246 bits (272), Expect = 3e-60 Identities = 298/403 (74%), Gaps = 2/403 (0%) Strand=Plus/Minus Query 165102 TGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATATAGCGC 165161 ||||||||||||| || || || ||||| |||||||||||| || |||||| || Sbjct 188886 TGAGTGGGAACTGAGTT-CCATCTGGGTATACGTCCTTGGATTACTGTTGCATATTCAGC 188828 Query 165162 ACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTC 165221 ||||| || |||||| |||| |||||| || | || ||| | |||||||| |||||||| Sbjct 188827 TCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTC 188768 Query 165222 TGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTCTTCCAAGCAGA 165281 ||||||||||||| | || || ||| ||||||| |||| |||| | || ||||| ||||| Sbjct 188767 TGATGGTATGCCTTTAGGAATATCTTGTACTTTCAACTTTATGATTGTATTCCAGGCAGA 188708 Query 165282 ACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATC 165341 |||||||| ||||||||||| || |||||| | || || ||||| ||||| | || || Sbjct 188707 GCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTATGCGGTTC 188648 Query 165342 TCTTTTC-TCTGCTATGCATGGAAGTCTTGTTACTTCCTCACTCGTCCGCGAGACAACTG 165400 || ||| |||||||||||| | | || || || | || | || || |||| Sbjct 188647 CCTATTCAAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGTTCAGGGAAACCACTG 188588 Query 165401 AAACAGAGAGTCAGAACTACGGTTATAAGTTTGGACAAGAAGAAGAGACCTATAACATCG 165460 ||| || | || | ||||| | ||||| ||||| |||||||| ||||| || | Sbjct 188587 AAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTG 188528 Query 165461 TCGCTGCCCACGGGTACTTCGGTCGTCTCATTTTCCAATACGC 165503 | || || || || || || || || | || |||||||| || Sbjct 188527 TGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGC 188485 Score = 239 bits (264), Expect = 5e-58 Identities = 251/330 (76%), Gaps = 0/330 (0%) Strand=Plus/Plus Query 165421 GGTTATAAGTTTGGACAAGAAGAAGAGACCTATAACATCGTCGCTGCCCACGGGTACTTC 165480 ||||| | ||||| ||||| |||||||| ||||| || || || || || || || || Sbjct 12116249 GGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTT 12116308 Query 165481 GGTCGTCTCATTTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTC 165540 || || | || |||||||| || || ||||| || ||||| | ||||||||| | Sbjct 12116309 GGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTG 12116368 Query 165541 GCAGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTC 165600 || || ||||||||||| || || |||||||||||| | ||| |||| || ||||| ||| Sbjct 12116369 GCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTC 12116428 Query 165601 AACCTGAACGGTTTCAACTTCAACCAGTCTATTGTTGATAGTCAGAACAAAATCATCCCT 165660 || || ||||| ||||| |||||||| ||| | |||||||| || | || | Sbjct 12116429 AATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAAT 12116488 Query 165661 ACTTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAAC 165720 ||||||||||| | | ||||||||| ||| ||||||||||| ||||| || ||||| Sbjct 12116489 ACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAAT 12116548 Query 165721 GCTCACAACTTCCCCCTCGACCTCGCTGCT 165750 |||||||||||||| || ||||| |||||| Sbjct 12116549 GCTCACAACTTCCCTCTAGACCTAGCTGCT 12116578 >seq5 Length=38039368 Score = 109 bits (120), Expect = 6e-19 Identities = 124/165 (75%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 165565 TGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAAC 165624 |||||||||||| | ||| |||| || ||||| ||||| || ||||| ||||| |||||| Sbjct 16640593 TGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAACGGGTTCAATTTCAAC 16640534 Query 165625 CAGTCTATTGTTGATAGTCAGAACAAAATCATCCCTACTTGGGCTGACGTTCTGAACCGT 165684 || ||| | |||||||| || | || |||||||||||| | | |||||| Sbjct 16640533 CA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTTATACTTGGGCTGATATCATCAACCGT 16640475 Query 165685 GCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAAC 165729 || ||| | ||||||||| ||||| || ||||| |||||| || Sbjct 16640474 GCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCACCAC 16640430 >seq11 Length=27185770 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165679 AACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTTCCCCCTC 165738 ||||||||| ||| ||||||||||| ||||| || ||||| |||||||||||||| || Sbjct 25910910 AACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTA 25910851 Query 165739 GACCTCGCTGCT 165750 ||||| |||||| Sbjct 25910850 GACCTAGCTGCT 25910839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563660715450880