Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq4 230 3e-55 >seq4 Length=26741765 Score = 230 bits (254), Expect = 3e-55 Identities = 295/404 (73%), Gaps = 2/404 (0%) Strand=Plus/Minus Query 170030 AGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTC 170089 |||||||||| | || | | ||||| ||||||||||| ||| |||||||| |||| Sbjct 188884 AGTGGGAACTGAGTT-CCATCTGGGTATACGTCCTTGGATTACTGTTGCATATTCAGCTC 188826 Query 170090 CAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAG 170149 | || |||| || |||||| ||||| | || ||| | ||||| ||| |||||| | Sbjct 188825 CTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTG 188766 Query 170150 ACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGC 170209 | || |||||| |||| || || |||| || ||||| ||| | |||||||| ||||||| Sbjct 188765 ATGGTATGCCTTTAGGAATATCTTGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGC 188706 Query 170210 ACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCAC 170269 | ||||| |||||||| ||||| || ||| ||| || |||||| | || | || | | Sbjct 188705 ATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTATGCGGTTCCC 188646 Query 170270 TCTTC-TCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGAT 170328 | ||| || ||||| ||||| | ||||| ||| | | |||| || || || || Sbjct 188645 TATTCAAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGTTCAGGGAAACCACTGAA 188586 Query 170329 AACGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTT 170388 ||||| || || | || |||| ||| || ||||| ||||| || || || ||||| Sbjct 188585 AACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTG 188526 Query 170389 GCAGCACATGGATACTTTGGTAGACTTATCTTCCAATATGCTAG 170432 || || ||||| || ||||| || | ||||||||||||||||| Sbjct 188525 GCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAG 188482 Score = 201 bits (222), Expect = 1e-46 Identities = 257/354 (73%), Gaps = 0/354 (0%) Strand=Plus/Plus Query 170314 AGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAAGAA 170373 || || || || || ||||| || || | || |||| ||| || ||||| ||||| Sbjct 12116216 AGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAG 12116275 Query 170374 ACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATCTTCCAATATGCTAGC 170433 || || || ||||| || || ||||| || ||||| || | ||||||||||||||||| Sbjct 12116276 ACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGT 12116335 Query 170434 TTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGG 170493 |||||||| |||| | | ||||||||| | ||| | | ||||||||| | || ||| Sbjct 12116336 TTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGG 12116395 Query 170494 TTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGATTTAACTTCAACCAG 170553 || ||| | | |||||| | || ||||| || || || || ||||| || |||||||| Sbjct 12116396 TTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAA 12116455 Query 170554 TCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGACGTTCTTAACAGAGCA 170613 || | || ||| | ||| || || ||| ||||| || | | ||| | || Sbjct 12116456 TCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCT 12116515 Query 170614 AACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTCCCACTTGAC 170667 || || ||||||||||||||||| || |||||||| ||||||||||| || ||| Sbjct 12116516 AATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGAC 12116569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582847912572800