Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq4 250 3e-61 seq5 96.9 4e-15 >seq4 Length=26741765 Score = 250 bits (276), Expect = 3e-61 Identities = 286/383 (75%), Gaps = 1/383 (0%) Strand=Plus/Plus Query 84215 AGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTC 84274 |||||| |||||||| | || || || || || ||||| || |||||||||||||| || Sbjct 188484 AGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTCTC 188543 Query 84275 CTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGAT 84334 || |||||||| || ||||||| | || || | ||||| || ||||| | || Sbjct 188544 TTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCTGAA 188603 Query 84335 TAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGA-GAATAGAGCTCCACCGAATACAC 84393 | | ||| || || | ||||||||||| ||| |||||| | || | ||||||| Sbjct 188604 CAAACTAGAGGTTACCAAAGAACCATGCATAGCACTTGAATAGGGAACCGCATAATACAC 188663 Query 84394 CAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAA 84453 |||| || || ||||||||||| |||||||||||||||||||| || |||||||| |||| Sbjct 188664 CAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATACAA 188723 Query 84454 GCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCC 84513 ||| ||||||| || | || || || | ||||| |||||||||||| ||||| | Sbjct 188724 TCATAAAGTTGAAAGTACAAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGAC 188783 Query 84514 CGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACAC 84573 | | ||| || | | ||| ||||| | || |||||||| ||||| || || |||||| Sbjct 188784 CAATAGGGTAAATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAACAG 188843 Query 84574 AGATCCATGGACGCATACCGAGA 84596 ||||| ||||| ||||| ||| Sbjct 188844 TAATCCAAGGACGTATACCCAGA 188866 Score = 242 bits (268), Expect = 4e-59 Identities = 242/314 (77%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 |||||||| || || |||||||||||||| |||||||||||||| ||||| || | Sbjct 12116562 GGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTAGCACGGTTGATG 12116503 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| ||||| | ||| || ||||||||| || | | || ||||| || Sbjct 12116502 ATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGATTGGTTGAAATTG 12116443 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 ||||| || ||||| || ||||| || |||| ||| | ||||| |||||||| || || Sbjct 12116442 AATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAACCAAATCCCTACT 12116383 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || ||||||||||||||||| ||||| | ||||||| ||||| || |||||| ||| Sbjct 12116382 ACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAACTAGCATATTGG 12116323 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | || || || || || ||||| || |||||||||||||| || || |||||| Sbjct 12116322 AAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTCTCTTCCTCTTGA 12116263 Query 84285 CCGAACTTGTAACC 84298 || || ||||||| Sbjct 12116262 CCAAATCTGTAACC 12116249 >seq5 Length=38039368 Score = 96.9 bits (106), Expect = 4e-15 Identities = 120/163 (74%), Gaps = 1/163 (1%) Strand=Plus/Plus Query 83994 TGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGTACATCGGCC 84053 || || |||||||||||||| ||||||||| |||| ||||| || | | ||| ||| Sbjct 16640434 TGAGCATTACGTTCGTGCATTACTTCCATAGCAAGATTTGCACGGTTGATGATATCAGCC 16640493 Query 84054 CAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTAAATCCATTC 84113 || |||| | ||| || ||||||||| || | | || ||||| || || || || Sbjct 16640494 CAAGTATAAATAACGCGACCTTGGCTATCAACTACA-GATGGTTGAAATTGAACCCGTTT 16640552 Query 84114 AGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAA 84156 ||||| || ||||| || |||| ||| | ||||| ||||||| Sbjct 16640553 AGATTGAAAGCCATAGTCCTAATACCTAAAGCAGTGAACCAAA 16640595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571273514308960