Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26]
12 sequences; 372,860,283 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq4 114 1e-19
seq6 111 1e-18
seq5 107 2e-17
seq8 100 2e-15
seq9 87.8 1e-11
>seq4
Length=26741765
Score = 114 bits (126), Expect = 1e-19
Identities = 114/148 (77%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448
|| |||| | ||||| | ||||| || ||||| || ||||||||||| | ||| |
Sbjct 8680736 AAATTACCAAAGCAGTGGTTACTGTTCCTGCATACTTCAATGACTCACAGAGGACAGCAA 8680795
Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508
| |||||||||||||||||||| ||| | | ||||| || ||||| |||||||| ||||
Sbjct 8680796 CAAAAGATGCTGGACGTATTGCAGGATTGGAAGTTCTCCGCATTATAAATGAACCGACTG 8680855
Query 550509 CTGCTGCACTTGCATATGGACTTGATAA 550536
|||| | ||||| ||||| |||| ||
Sbjct 8680856 CTGCATCCCTTGCTTATGGTTTTGAGAA 8680883
>seq6
Length=37594838
Score = 111 bits (122), Expect = 1e-18
Identities = 108/139 (78%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457
|||| || | ||||| || ||||| || ||||| || || | || || ||||||||||
Sbjct 35688544 ATGCTGTTGTCACTGTTCCTGCATACTTCAATGATTCCCAGAGGCAGGCAACTAAAGATG 35688603
Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517
| || |||||| || ||||||||| | ||||| |||||||| || || |||||||||
Sbjct 35688604 CAGGTGTTATTGCGGGTCTTAATGTTATGCGTATCATCAATGAGCCAACAGCTGCTGCAA 35688663
Query 550518 TTGCATATGGACTTGATAA 550536
|||| ||||| ||||| ||
Sbjct 35688664 TTGCTTATGGTCTTGACAA 35688682
Score = 107 bits (118), Expect = 2e-17
Identities = 101/129 (78%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459
|| || || ||||| ||||| ||||| ||||| | || ||||| ||||| || ||||||
Sbjct 778886 GCTGTGATTACTGTTCCAGCTTATTTCAATGATGCTCAGCGTCAGGCTACCAAGGATGCT 778827
Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519
|| || || ||||||||| |||| | | || ||||||||||| ||||||||||| ||
Sbjct 778826 GGTCGCATCGCTGGACTTGATGTCCAAAGAATCATCAATGAACCCACTGCTGCTGCTCTG 778767
Query 550520 GCATATGGA 550528
| ||||||
Sbjct 778766 TCTTATGGA 778758
>seq5
Length=38039368
Score = 107 bits (118), Expect = 2e-17
Identities = 101/129 (78%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459
|| || || || || ||||| ||||||||||| | || ||||| || || || ||||||
Sbjct 34737615 GCCGTGATTACAGTTCCAGCTTATTTTAATGATGCTCAGCGTCAGGCAACCAAGGATGCT 34737556
Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519
|| || |||||||||||| |||| | | || ||||||||||| ||||||||||| ||
Sbjct 34737555 GGTCGCATTGCTGGACTTGATGTCCAGAGGATCATCAATGAACCAACTGCTGCTGCTCTG 34737496
Query 550520 GCATATGGA 550528
| ||||||
Sbjct 34737495 TCTTATGGA 34737487
>seq8
Length=30429317
Score = 100 bits (110), Expect = 2e-15
Identities = 111/148 (75%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448
|||| || | ||||| || || || ||||||||||| |||||||||||| | ||| |
Sbjct 12895131 AAGTCACAAAGGCAGTGATCACAGTCCCAGCATATTTCAATGACTCACAAAGGACAGCAA 12895190
Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508
| ||||||||||| || |||||||| | | ||||| || || || || || |||||||
Sbjct 12895191 CAAAAGATGCTGGCCGGATTGCTGGGTTGGAAGTTCTCCGCATCATAAACGAGCCTACTG 12895250
Query 550509 CTGCTGCACTTGCATATGGACTTGATAA 550536
| || | | |||||||| |||| ||
Sbjct 12895251 CAGCATCTTTGGCATATGGGTTTGAAAA 12895278
>seq9
Length=31548187
Score = 87.8 bits (96), Expect = 1e-11
Identities = 157/225 (70%), Gaps = 6/225 (3%)
Strand=Plus/Plus
Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310
|||||| || || ||||| || ||||| ||| | ||| || |||||||| || ||
Sbjct 28421659 CCTGAGGCGAAGGACAAGGTGGAGGGTGGACTCCTTCTGG--ATGTTGTAATCCGCGAGG 28421716
Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370
|| | ||| || ||||| || || ||||| || || | |||||| ||||| |||||
Sbjct 28421717 GTGCGGCCATCCTCTAGTTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCAGGTGGAATG 28421776
Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTC 563429
|| || || || ||||| || || || ||||||||||||| | || | | ||
Sbjct 28421777 CCCTCCTTGTCCTGAATCTTGGCCTTCACATTGTCAATTGTATCAGAG-GACTCAACCTC 28421835
Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
||| || | || || ||||| || || || || || || |||||
Sbjct 28421836 GAGGGTGATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 28421880
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029295365385880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |