Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq4 114 1e-19 seq6 111 1e-18 seq5 107 2e-17 seq8 100 2e-15 seq9 87.8 1e-11 >seq4 Length=26741765 Score = 114 bits (126), Expect = 1e-19 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 || |||| | ||||| | ||||| || ||||| || ||||||||||| | ||| | Sbjct 8680736 AAATTACCAAAGCAGTGGTTACTGTTCCTGCATACTTCAATGACTCACAGAGGACAGCAA 8680795 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | |||||||||||||||||||| ||| | | ||||| || ||||| |||||||| |||| Sbjct 8680796 CAAAAGATGCTGGACGTATTGCAGGATTGGAAGTTCTCCGCATTATAAATGAACCGACTG 8680855 Query 550509 CTGCTGCACTTGCATATGGACTTGATAA 550536 |||| | ||||| ||||| |||| || Sbjct 8680856 CTGCATCCCTTGCTTATGGTTTTGAGAA 8680883 >seq6 Length=37594838 Score = 111 bits (122), Expect = 1e-18 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | ||||| || ||||| || ||||| || || | || || |||||||||| Sbjct 35688544 ATGCTGTTGTCACTGTTCCTGCATACTTCAATGATTCCCAGAGGCAGGCAACTAAAGATG 35688603 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | || |||||| || ||||||||| | ||||| |||||||| || || ||||||||| Sbjct 35688604 CAGGTGTTATTGCGGGTCTTAATGTTATGCGTATCATCAATGAGCCAACAGCTGCTGCAA 35688663 Query 550518 TTGCATATGGACTTGATAA 550536 |||| ||||| ||||| || Sbjct 35688664 TTGCTTATGGTCTTGACAA 35688682 Score = 107 bits (118), Expect = 2e-17 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || ||||| ||||| ||||| ||||| | || ||||| ||||| || |||||| Sbjct 778886 GCTGTGATTACTGTTCCAGCTTATTTCAATGATGCTCAGCGTCAGGCTACCAAGGATGCT 778827 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || || ||||||||| |||| | | || ||||||||||| ||||||||||| || Sbjct 778826 GGTCGCATCGCTGGACTTGATGTCCAAAGAATCATCAATGAACCCACTGCTGCTGCTCTG 778767 Query 550520 GCATATGGA 550528 | |||||| Sbjct 778766 TCTTATGGA 778758 >seq5 Length=38039368 Score = 107 bits (118), Expect = 2e-17 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || || || ||||| ||||||||||| | || ||||| || || || |||||| Sbjct 34737615 GCCGTGATTACAGTTCCAGCTTATTTTAATGATGCTCAGCGTCAGGCAACCAAGGATGCT 34737556 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || || |||||||||||| |||| | | || ||||||||||| ||||||||||| || Sbjct 34737555 GGTCGCATTGCTGGACTTGATGTCCAGAGGATCATCAATGAACCAACTGCTGCTGCTCTG 34737496 Query 550520 GCATATGGA 550528 | |||||| Sbjct 34737495 TCTTATGGA 34737487 >seq8 Length=30429317 Score = 100 bits (110), Expect = 2e-15 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 550389 AAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTA 550448 |||| || | ||||| || || || ||||||||||| |||||||||||| | ||| | Sbjct 12895131 AAGTCACAAAGGCAGTGATCACAGTCCCAGCATATTTCAATGACTCACAAAGGACAGCAA 12895190 Query 550449 CTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTG 550508 | ||||||||||| || |||||||| | | ||||| || || || || || ||||||| Sbjct 12895191 CAAAAGATGCTGGCCGGATTGCTGGGTTGGAAGTTCTCCGCATCATAAACGAGCCTACTG 12895250 Query 550509 CTGCTGCACTTGCATATGGACTTGATAA 550536 | || | | |||||||| |||| || Sbjct 12895251 CAGCATCTTTGGCATATGGGTTTGAAAA 12895278 >seq9 Length=31548187 Score = 87.8 bits (96), Expect = 1e-11 Identities = 157/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 |||||| || || ||||| || ||||| ||| | ||| || |||||||| || || Sbjct 28421659 CCTGAGGCGAAGGACAAGGTGGAGGGTGGACTCCTTCTGG--ATGTTGTAATCCGCGAGG 28421716 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | ||| || ||||| || || ||||| || || | |||||| ||||| ||||| Sbjct 28421717 GTGCGGCCATCCTCTAGTTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCAGGTGGAATG 28421776 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTC 563429 || || || || ||||| || || || ||||||||||||| | || | | || Sbjct 28421777 CCCTCCTTGTCCTGAATCTTGGCCTTCACATTGTCAATTGTATCAGAG-GACTCAACCTC 28421835 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| || | || || ||||| || || || || || || ||||| Sbjct 28421836 GAGGGTGATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 28421880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029295365385880