Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq4 197 4e-46 >seq4 Length=26741765 Score = 197 bits (218), Expect = 4e-46 Identities = 293/411 (71%), Gaps = 6/411 (1%) Strand=Plus/Minus Query 26142 AGTGGGAACTATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCAC 26201 |||||||||| || || || || || | || ||||| |||||||||| |||| | Sbjct 188884 AGTGGGAACTGAGTTCCAT-CTGGGTATACGTCCTTGGATTACTGTTGCATATTCAGCTC 188826 Query 26202 CACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTG 26261 | | | || ||| ||| || ||||| |||| ||| | || ||||| ||||| || Sbjct 188825 CTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTG 188766 Query 26262 ATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAAC 26321 |||| |||||| | || || ||| ||||||| ||||||||| | |||||||| ||||| | Sbjct 188765 ATGGTATGCCTTTAGGAATATCTTGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGC 188706 Query 26322 ATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTC 26381 |||| || || ||||| ||||| || ||| ||||| ||||| || || | || | | Sbjct 188705 ATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTATGCGGTTCCC 188646 Query 26382 TTTTCGC-TGCTATGCACGGAAGTTTGGTTACTTCCTCACTTATTGCAG--AAACGACAG 26438 | ||| ||||||||| || |||||| || || | || | ||| |||| || | Sbjct 188645 TATTCAAGTGCTATGCATGGTTCTTTGGTAACCTCT--AGTTTGTTCAGGGAAACCACTG 188588 Query 26439 AGGAAGTCTCACAGAATTATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTG 26498 | | | || ||| | || || | ||||| ||||| |||||||| |||||||||| Sbjct 188587 AAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTG 188528 Query 26499 TCGCTGCACACGGGTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTA 26549 | || || || || || ||||| ||||||| || || ||||| |||| || Sbjct 188527 TGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTGTA 188477 Score = 197 bits (218), Expect = 4e-46 Identities = 236/318 (74%), Gaps = 2/318 (1%) Strand=Plus/Plus Query 26468 TTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTA 26527 ||||| ||||| |||||||| ||||||||||| || || || || || ||||| ||||| Sbjct 12116258 TTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTA 12116317 Query 26528 ATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGG 26587 || || || ||||| |||||||| ||| |||||| | || ||||| | ||| ||||| Sbjct 12116318 ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG 12116377 Query 26588 CCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAAT 26647 || || || || || ||| | || || | ||||| | || ||||| || || ||||| Sbjct 12116378 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAAC 12116437 Query 26648 GGTTTTAACTTTAACCAGTCAGTAGTAGAT-GTTAATGGAAAGATAATACCTACATGGGC 26706 || || || || ||||| || ||||| ||| | || | | || || ||| ||||| Sbjct 12116438 GGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTA-ATACTTGGGC 12116496 Query 26707 TGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAA 26766 |||| | | ||||| ||||| || || | ||||| |||||||| ||||||||||| || Sbjct 12116497 TGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAA 12116556 Query 26767 CTTTCCACTTGACTTAGC 26784 ||| || || ||| |||| Sbjct 12116557 CTTCCCTCTAGACCTAGC 12116574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146726379091488