Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26]
12 sequences; 372,860,283 total letters
Query= NC_016656.1
Length=45890
Score E
Sequences producing significant alignments: (Bits) Value
seq4 197 4e-46
>seq4
Length=26741765
Score = 197 bits (218), Expect = 4e-46
Identities = 293/411 (71%), Gaps = 6/411 (1%)
Strand=Plus/Minus
Query 26142 AGTGGGAACTATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCAC 26201
|||||||||| || || || || || | || ||||| |||||||||| |||| |
Sbjct 188884 AGTGGGAACTGAGTTCCAT-CTGGGTATACGTCCTTGGATTACTGTTGCATATTCAGCTC 188826
Query 26202 CACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTG 26261
| | | || ||| ||| || ||||| |||| ||| | || ||||| ||||| ||
Sbjct 188825 CTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTG 188766
Query 26262 ATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAAC 26321
|||| |||||| | || || ||| ||||||| ||||||||| | |||||||| ||||| |
Sbjct 188765 ATGGTATGCCTTTAGGAATATCTTGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGC 188706
Query 26322 ATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTC 26381
|||| || || ||||| ||||| || ||| ||||| ||||| || || | || | |
Sbjct 188705 ATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTATGCGGTTCCC 188646
Query 26382 TTTTCGC-TGCTATGCACGGAAGTTTGGTTACTTCCTCACTTATTGCAG--AAACGACAG 26438
| ||| ||||||||| || |||||| || || | || | ||| |||| || |
Sbjct 188645 TATTCAAGTGCTATGCATGGTTCTTTGGTAACCTCT--AGTTTGTTCAGGGAAACCACTG 188588
Query 26439 AGGAAGTCTCACAGAATTATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTG 26498
| | | || ||| | || || | ||||| ||||| |||||||| ||||||||||
Sbjct 188587 AAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTG 188528
Query 26499 TCGCTGCACACGGGTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTA 26549
| || || || || || ||||| ||||||| || || ||||| |||| ||
Sbjct 188527 TGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTGTA 188477
Score = 197 bits (218), Expect = 4e-46
Identities = 236/318 (74%), Gaps = 2/318 (1%)
Strand=Plus/Plus
Query 26468 TTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTA 26527
||||| ||||| |||||||| ||||||||||| || || || || || ||||| |||||
Sbjct 12116258 TTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTA 12116317
Query 26528 ATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGG 26587
|| || || ||||| |||||||| ||| |||||| | || ||||| | ||| |||||
Sbjct 12116318 ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG 12116377
Query 26588 CCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAAT 26647
|| || || || || ||| | || || | ||||| | || ||||| || || |||||
Sbjct 12116378 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAAC 12116437
Query 26648 GGTTTTAACTTTAACCAGTCAGTAGTAGAT-GTTAATGGAAAGATAATACCTACATGGGC 26706
|| || || || ||||| || ||||| ||| | || | | || || ||| |||||
Sbjct 12116438 GGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTA-ATACTTGGGC 12116496
Query 26707 TGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAA 26766
|||| | | ||||| ||||| || || | ||||| |||||||| ||||||||||| ||
Sbjct 12116497 TGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAA 12116556
Query 26767 CTTTCCACTTGACTTAGC 26784
||| || || ||| ||||
Sbjct 12116557 CTTCCCTCTAGACCTAGC 12116574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146726379091488
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |