Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq4 244 3e-60 >seq4 Length=26741765 Score = 244 bits (270), Expect = 3e-60 Identities = 299/403 (74%), Gaps = 4/403 (1%) Strand=Plus/Plus Query 36213 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 36272 |||||||| |||||||| | || ||||| || |||||||| || ||||| ||||| ||| Sbjct 188482 CTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTC 188541 Query 36273 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCAC-G 36331 ||||| ||||| || ||| | || || | || |||||| |||| ||||| | | Sbjct 188542 TCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCTG 188601 Query 36332 AATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGC-GAATAAAGCTCCACCGAATA 36390 || || || | || || | | || ||||||||| ||||| | || | |||| Sbjct 188602 AACAAACTAG-AGGTTACCAAAGAACCATGCATAGCACTTGAATAGGGAACCGCATAATA 188660 Query 36391 CCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGA 36450 | || || ||||| | ||| || || |||||||||||||| || || |||||||| || | Sbjct 188661 CACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATA 188720 Query 36451 CAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTT 36510 ||| |||||| |||||||| | || || || | ||||||||||||||||||||| |||| Sbjct 188721 CAATCATAAAGTTGAAAGTACAAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTT 188780 Query 36511 GTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTA 36570 | |||| |||||| | ||||| ||||| || ||||||||||| |||||||| || | Sbjct 188781 GACCAATAGGGTAAATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAA 188840 Query 36571 CACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCA 36613 || ||||| || | ||||| || | |||| |||||||| Sbjct 188841 CAGTAATCCAAGGACGTATACCCAG-ATGGAACTCAGTTCCCA 188882 Score = 203 bits (224), Expect = 1e-47 Identities = 243/330 (74%), Gaps = 0/330 (0%) Strand=Plus/Minus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 ||| |||||||| || ||||||||||| || ||||| || ||||| |||||||| || | Sbjct 12116578 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 12116519 Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 36088 | |||||||| | || ||||||||||| | || | || | | |||||| || Sbjct 12116518 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTAC 12116459 Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGT 36148 || || ||||| || || ||||| ||||| ||||||||||| | || | ||| || Sbjct 12116458 AGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGT 12116399 Query 36149 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATT 36208 | ||| || | || ||||||||||||| |||||| |||||| || || || Sbjct 12116398 GAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 12116339 Query 36209 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 36268 ||| |||||||| |||||||| | || ||||| || |||||||| || ||||| ||||| Sbjct 12116338 AAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATA 12116279 Query 36269 CGTCTCTTCTTCTTGGCCGAATTTATATCC 36298 |||||||| ||||| || ||| | || || Sbjct 12116278 AGTCTCTTCCTCTTGACCAAATCTGTAACC 12116249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150454378560248