Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq4 246 9e-61 seq5 109 2e-19 seq11 102 2e-17 >seq4 Length=26741765 Score = 246 bits (272), Expect = 9e-61 Identities = 255/333 (77%), Gaps = 6/333 (2%) Strand=Plus/Minus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 12116578 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 12116519 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACC---GCTAGAGTCAAC 5307 || |||||||| | || ||| |||||||| || | | ||| |||| ||||| Sbjct 12116518 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTA---TCAAC 12116462 Query 5308 GACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGA 5367 || || || ||||| || || ||||| ||||| ||||||||||| || || | || Sbjct 12116461 TACAGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGC 12116402 Query 5368 GGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATT 5427 || | ||| || | || || ||||||| ||||| |||||| |||||| ||| || Sbjct 12116401 AGTGAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTT 12116342 Query 5428 GTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTT 5487 |||||| |||||||| |||||||| | || ||||| || |||||||| || ||||| || Sbjct 12116341 GTTAAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATT 12116282 Query 5488 ATACGTTTCTTCCTCTTGGCCGAATTTATATCC 5520 ||| || ||||||||||| || ||| | || || Sbjct 12116281 ATAAGTCTCTTCCTCTTGACCAAATCTGTAACC 12116249 Score = 226 bits (250), Expect = 9e-55 Identities = 295/403 (73%), Gaps = 4/403 (1%) Strand=Plus/Plus Query 5435 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTT 5494 |||||||| |||||||| | || ||||| || |||||||| || ||||| ||||| || Sbjct 188482 CTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTC 188541 Query 5495 TCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCAC-G 5553 ||||||||||| || ||| | || || | || ||| |||| ||||| | | Sbjct 188542 TCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCTG 188601 Query 5554 AATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGC-GAACAAAGCTCCACCGAATA 5612 || | | | || || || | | |||||||||||| ||| | | || | |||| Sbjct 188602 AACAAACTA-GAGGTTACCAAAGAACCATGCATAGCACTTGAATAGGGAACCGCATAATA 188660 Query 5613 CCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATA 5672 | ||||| ||||| | |||||| || |||||||||||||| || || ||||||||||||| Sbjct 188661 CACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATA 188720 Query 5673 CGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCT 5732 | | ||||||||| ||||||| ||| || || | ||||||||||||| ||||||||| | Sbjct 188721 CAATCATAAAGTTGAAAGTACAAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTT 188780 Query 5733 GTCCGAAAGGGTATACTAAAAATACTGAGTAGGCTGCGGCAACCGGTGCTGAATATGCTA 5792 | || | |||||| | || || || | | || || ||||| || ||||||||||| | Sbjct 188781 GACCAATAGGGTAAATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAA 188840 Query 5793 CGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCA 5835 | |||||| || || || || | || |||| |||||||| Sbjct 188841 CAGTAATCCAAGGACGTATACC-CAGATGGAACTCAGTTCCCA 188882 >seq5 Length=38039368 Score = 109 bits (120), Expect = 2e-19 Identities = 112/144 (78%), Gaps = 7/144 (5%) Strand=Plus/Plus Query 5212 GTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTGGCACGGTTCAGGACATC 5271 || ||||||||| ||||||||||||||||||||| |||| || |||||||| | || ||| Sbjct 16640430 GTGGTGAGCATTACGTTCGTGCATTACTTCCATAGCAAGATTTGCACGGTTGATGATATC 16640489 Query 5272 TGCCCAAGTGGGAACGATTCTACC---GCTAGAGTCAACGACTGACTGATTGAAGTTAAA 5328 |||||||| || | | ||| |||| ||||| || || || ||||| || || Sbjct 16640490 AGCCCAAGTATAAATAACGCGACCTTGGCTA---TCAACTACAGA-TGGTTGAAATTGAA 16640545 Query 5329 GCCGTTAAGATTAAAAGCCATAGT 5352 ||||| ||||| ||||||||||| Sbjct 16640546 CCCGTTTAGATTGAAAGCCATAGT 16640569 >seq11 Length=27185770 Score = 102 bits (112), Expect = 2e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || ||||||||||||||||| |||||||||||||||||||||||||| Sbjct 25910839 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 25910898 Query 5251 GTTGGCACGGTTCAGGACATCTGC 5274 || |||||||| | || ||| || Sbjct 25910899 ATTAGCACGGTTGATGATATCAGC 25910922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152649578247432