Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq4 239 1e-58 >seq4 Length=26741765 Score = 239 bits (264), Expect = 1e-58 Identities = 298/403 (74%), Gaps = 4/403 (1%) Strand=Plus/Plus Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 |||||||| |||||||| | || ||||| || |||||||| || ||||| ||||| ||| Sbjct 188482 CTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTC 188541 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCAC-G 25811 ||||| ||||| || ||| | || || | || |||||| |||| ||||| | | Sbjct 188542 TCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCTG 188601 Query 25812 AATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGC-GAATAAAGCTCCACCGAATA 25870 || || || | || || | | || ||||||||| ||||| | || | |||| Sbjct 188602 AACAAACTAG-AGGTTACCAAAGAACCATGCATAGCACTTGAATAGGGAACCGCATAATA 188660 Query 25871 CCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGA 25930 | || || ||||| | ||| || || |||||||||||||| || || |||||||| || | Sbjct 188661 CACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATA 188720 Query 25931 CAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTT 25990 ||| |||||| |||||||| | || || || | ||||||||||||||||||||| |||| Sbjct 188721 CAATCATAAAGTTGAAAGTACAAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTT 188780 Query 25991 GTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTA 26050 | |||| |||||| | ||||| ||||| || ||||||||||| |||||||| || | Sbjct 188781 GACCAATAGGGTAAATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAA 188840 Query 26051 CACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCA 26093 || ||||| || | || || || | |||| |||||||| Sbjct 188841 CAGTAATCCAAGGACGTATACCCAG-ATGGAACTCAGTTCCCA 188882 Score = 205 bits (226), Expect = 3e-48 Identities = 241/326 (74%), Gaps = 0/326 (0%) Strand=Plus/Minus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| |||||||||||||| || ||||| || ||||| |||||||| || | | Sbjct 12116574 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 12116515 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||| | || ||||||||||| | || | || | | |||||| || || Sbjct 12116514 GCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGAT 12116455 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || || ||||| ||||| ||||||||||| | || | ||| || | | Sbjct 12116454 TGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAAC 12116395 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | || ||||||||||||| |||||| |||||| ||| || ||||| Sbjct 12116394 CAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAA 12116335 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 |||||||| |||||||| | || ||||| || |||||||| || ||||| ||||| ||| Sbjct 12116334 CTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTC 12116275 Query 25753 TCTTCTTCTTGGCCGAATTTATATCC 25778 ||||| ||||| || ||| | || || Sbjct 12116274 TCTTCCTCTTGACCAAATCTGTAACC 12116249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151993578340912