Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq4 255 6e-63 seq5 111 2e-19 seq11 89.7 6e-13 >seq4 Length=26741765 Score = 255 bits (282), Expect = 6e-63 Identities = 277/366 (76%), Gaps = 6/366 (2%) Strand=Plus/Plus Query 163123 AGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAG 163182 || ||||| ||||| | || || || | ||||| | || || ||||| |||||| Sbjct 12116216 AGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAG 12116275 Query 163183 ACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCT 163242 ||||| || ||||| || |||||||| || ||||| || || |||||||| ||||| | Sbjct 12116276 ACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGT 12116335 Query 163243 TTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGG 163302 || |||||||| ||||| | ||||||||| | ||||| | ||||| || | || ||| Sbjct 12116336 TTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGG 12116395 Query 163303 TTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAA 163362 |||||||| | ||| | |||||||| ||||| || ||||| ||||| ||||||||| Sbjct 12116396 TTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAA 12116455 Query 163363 TCCGTCGTTGA---CGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGA 163419 || || ||||| | |||| | || ||| ||||||||| |||||| | ||| | Sbjct 12116456 TCTGTAGTTGATAGCCAAGGTCG---CGTTATTAATACTTGGGCTGATATCATCAACCGT 12116512 Query 163420 GCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTT 163479 || |||||||||||||| |||||||| |||||||||||||||||||| || ||||| Sbjct 12116513 GCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTA 12116572 Query 163480 GCTGCT 163485 |||||| Sbjct 12116573 GCTGCT 12116578 Score = 248 bits (274), Expect = 1e-60 Identities = 297/401 (74%), Gaps = 2/401 (0%) Strand=Plus/Minus Query 162839 AGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCAC 162898 |||||||||| || | || ||||| ||||||||||| ||||||||| || || | Sbjct 188884 AGTGGGAACTGAGTTCCATCTG-GGTATACGTCCTTGGATTACTGTTGCATATTCAGCTC 188826 Query 162899 CAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTG 162958 | || | || || |||||| |||||| | || ||| | |||||||| |||||||| Sbjct 188825 CTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTG 188766 Query 162959 ACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGC 163018 | | |||||| | || || ||| ||||||| |||| ||| | || ||||| ||||||| Sbjct 188765 ATGGTATGCCTTTAGGAATATCTTGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGC 188706 Query 163019 ACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCAC 163078 | |||||||| ||||| || || || ||| | || || || |||||||| | ||||| | Sbjct 188705 ATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTATGCGGTTCCC 188646 Query 163079 TCTT-TAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAG 163137 | || ||||||||||| |||||| | || || ||| | | |||| ||||| ||||| Sbjct 188645 TATTCAAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGTTCAGGGAAACCACTGAA 188586 Query 163138 CAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTT 163197 | || || || | ||||| | || || ||||| ||||||||||| || ||||| Sbjct 188585 AACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTG 188526 Query 163198 GCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGC 163238 || |||||||| || ||||| || || |||||||| ||||| Sbjct 188525 GCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGC 188485 >seq5 Length=38039368 Score = 111 bits (122), Expect = 2e-19 Identities = 128/168 (76%), Gaps = 7/168 (4%) Strand=Plus/Minus Query 163300 TGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAAC 163359 ||||||||||| | ||| | |||||||| ||||| || ||||| ||||| |||||| Sbjct 16640593 TGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAACGGGTTCAATTTCAAC 16640534 Query 163360 CAATCCGTCGTTGAC-GC--AGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAAC 163416 || || || ||||| || |||| | || ||| ||||||||| |||||| | ||| Sbjct 16640533 CA-TCTGTAGTTGATAGCCAAGGTCGC---GTTATTTATACTTGGGCTGATATCATCAAC 16640478 Query 163417 AGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAAC 163464 | ||| |||| ||||||||| |||||||| |||||||||||| || Sbjct 16640477 CGTGCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCACCAC 16640430 >seq11 Length=27185770 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 163402 GCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCAC 163461 || |||||| | ||| | || |||||||||||||| |||||||| |||||||||||| Sbjct 25910922 GCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCAC 25910863 Query 163462 AACTTCCCACTTGACCTTGCTGCT 163485 |||||||| || ||||| |||||| Sbjct 25910862 AACTTCCCTCTAGACCTAGCTGCT 25910839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553084717037280