Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq4 221 1e-52 seq1 95.1 1e-14 >seq4 Length=26741765 Score = 221 bits (244), Expect = 1e-52 Identities = 247/330 (75%), Gaps = 0/330 (0%) Strand=Plus/Plus Query 163549 GGTTACAAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTC 163608 ||||||| ||||||||||| |||||||| || || || || || || ||||| || || Sbjct 12116249 GGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTT 12116308 Query 163609 GGTCGTTTGATCTTCCAATATGCATCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTG 163668 || || || |||||||||||||| || |||||| | | | ||||||||| || Sbjct 12116309 GGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTG 12116368 Query 163669 GCAGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTAAGCACCATGGCATTC 163728 || || |||||||| || || || ||||| ||||| | || | || || ||||| ||| Sbjct 12116369 GCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTC 12116428 Query 163729 AACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGCTCAAC 163788 || || ||||| ||||| |||||||| || | ||||| | || ||||| || | || Sbjct 12116429 AATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAAT 12116488 Query 163789 ACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAAC 163848 |||||||| || | | ||||| ||| ||| ||||||||||| ||||| || ||||| Sbjct 12116489 ACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAAT 12116548 Query 163849 GCACACAACTTCCCACTCGATCTTGCTGCT 163878 || ||||||||||| || || || |||||| Sbjct 12116549 GCTCACAACTTCCCTCTAGACCTAGCTGCT 12116578 Score = 219 bits (242), Expect = 5e-52 Identities = 276/378 (73%), Gaps = 1/378 (0%) Strand=Plus/Minus Query 163255 GGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTC 163314 ||||| || || ||||| ||| ||||| || || ||||||||||| || |||| || Sbjct 188862 GGTATACGTCCTTGGATTACTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTT 188803 Query 163315 TTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCT 163374 ||| || | || ||| | |||||||| ||||||||| | ||||| | || || ||| Sbjct 188802 TTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCT 188743 Query 163375 GGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTC 163434 | || ||||||| ||| |||| ||||| |||||||| |||||||| ||||| || || Sbjct 188742 TGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTT 188683 Query 163435 CATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACTCTTCTCG-GCAATGCATGGCAG 163493 || ||||| || || |||||||| || | || || || ||| | || |||||||| Sbjct 188682 CACATGTTAGGTGTAGCTGGTGTATTATGCGGTTCCCTATTCAAGTGCTATGCATGGTTC 188623 Query 163494 TCTTGTTACCTCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAAAACTATGGTTA 163553 | | || |||||| | || | || || ||||||| || || || | ||||| Sbjct 188622 TTTGGTAACCTCTAGTTTGTTCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTA 188563 Query 163554 CAAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGGTCG 163613 || ||||||||||| |||||||| || || || || || || ||||| || || || || Sbjct 188562 CAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCG 188503 Query 163614 TTTGATCTTCCAATATGC 163631 || |||||||||||||| Sbjct 188502 ATTAATCTTCCAATATGC 188485 >seq1 Length=46529941 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 164619 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGATTACTACTTCTT 164678 || |||||| | | | || || ||||||||||| || |||||||| || | ||| || Sbjct 26428800 GACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGCCTATTGCTTTTT 26428741 Query 164679 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGG 164738 || ||||||| | || | || |||||| |||| || ||| ||||||| || |||| Sbjct 26428740 CCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 26428681 Query 164739 TACACCCATGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTCACAGCAGCTGTC 164798 || |||||||| | || ||||||| | |||||| || || | || ||||| || Sbjct 26428680 TATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTAACCGCAGCAGTT 26428621 Query 164799 TC 164800 || Sbjct 26428620 TC 26428619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563209515518560