Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq9 217 3e-51 >seq9 Length=31548187 Score = 217 bits (240), Expect = 3e-51 Identities = 574/868 (66%), Gaps = 29/868 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| |||||||| ||||| |||| || |||||| ||| Sbjct 1132987 CTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTC 1132928 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956 ||| || ||| ||||||| ||| |||| | | || || || | | ||| Sbjct 1132927 CATCCAGTCGAACGGGTTGGCGACGTTGTACATCTTCTTG-CAC-CCGAGCGCCATGAGC 1132870 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 || | || |||||| |||||||||| | |||||| | |||||| || | ||| Sbjct 1132869 AGCCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGCTCGCCGTTCATCCCGACGAGC 1132810 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 | ||||| | || | || |||||| |||| || | |||||| || | || ||| Sbjct 1132809 GCGACGGGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCGTCGGCGACGATC 1132750 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 | || ||||| ||||| | | ||| ||| ||| | | | ||||| | |||||| Sbjct 1132749 TCCTGGACGCGTGACTCGTCGAGCTTGCCGCGGAGGAGGTCG---TAGAGGAGGCAGGCG 1132693 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| | ||| | || ||||| ||| ||||||| ||||||||||| ||| || ||| Sbjct 1132692 AAGTCGCAGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGC 1132633 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 |||| || | || ||||||||||| || || ||| || || ||||||||||| ||| Sbjct 1132632 ATGAGTCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAATGAACCCGAGAAGAAGATCCCC 1132573 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC-TTGTCTGAGATCCA 48315 || || ||||| ||| ||| | ||| | |||||| || | | |||||| Sbjct 1132572 TCGACGCAGGCGAAGGCGACGAGGCGCTCGGC----GAAGCGCTCGCCGCCGTCGATCCA 1132517 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGC----ATCGTCTCTATGGCCCGGA 48371 | |||||||| ||||| | ||| ||| | || || ||||| |||| Sbjct 1132516 TCGCATGGCCCAGTCGGCCTT----GCGGCGCACGGCGGGGACGGTGTCGATGGCGCGGA 1132461 Query 48372 AGA---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACA 48428 ||| | | ||| ||| | |||| | || || |||||| | ||||| Sbjct 1132460 AGAGGCGGTCCTT---CTCGACGTCGTCGCGGATGTACGTCTCGAGCAGAAGCGAGTACA 1132404 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||| ||||| | ||||| || ||||||||||| ||||||||||| | ||||| | Sbjct 1132403 TCTCCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGCGCCTCGGCGA 1132344 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 ||||||| || | ||| || || ||||| || || || || || || | Sbjct 1132343 CCTGCACGTCGGACATGAACCTGGAGGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCGG 1132284 Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCATTCC 48605 | |||||||| || || || | ||| |||||||||| | | || |||| || Sbjct 1132283 CGAAGAAGGCGAGCACGTGGGAGACGAAGTGGCGCTCGTCGGACGACAGCGCGGCATCCC 1132224 Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTT 48665 || | |||| | |||||||| || ||| | |||||||| ||||| | || | Sbjct 1132223 AGTGGCGCGCGTCGGCGGAGAGGTCCACCTCCTCCGCCGTCCAGAACGACGCCACCGCCT 1132164 Query 48666 TTTTGTACATGCCCCATATGTCCGGATA 48693 | ||||| | |||| || | ||| || Sbjct 1132163 TCTTGTAGAACTCCCAGATCTGCGGGTA 1132136 Score = 168 bits (186), Expect = 1e-36 Identities = 275/392 (70%), Gaps = 7/392 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| |||||||| ||||| |||| || |||||| ||| Sbjct 8707309 CTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTC 8707368 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC--CGTGTCAGGCCCATCTGTTCCAGC 47956 ||| || ||||||||||| ||| |||| | | || ||| || | | || Sbjct 8707369 CATCCAGTCGAAGGGGTTGGCGACGTTGTACATCTTCTTG-CAG-CCGAGCGCCATGAGG 8707426 Query 47957 AGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGG 48016 ||| | || |||||| |||||||||| | ||||||| | ||||||||| | ||| Sbjct 8707427 AGGCGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCGACGAGC 8707486 Query 48017 GACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 | ||||| | || | || |||||| |||| || | ||||| || | || ||| Sbjct 8707487 GCGACGGGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCGACGGCGTCGGCGACGATC 8707546 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 | ||||| | ||| | | ||| ||| ||| | | | ||||| | |||||| Sbjct 8707547 TCGCGGACGCGCGCCTCGTCGAGCTTGCCGCGGAGGAGGTCG---TAGAGGAGGCAGGCG 8707603 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 ||||| | ||||| ||| ||||| ||| ||||||| ||||||||||| ||| || ||| Sbjct 8707604 AAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGC 8707663 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGC 48228 |||| ||||| || ||||||||||| || || Sbjct 8707664 ATGAGCCCCCGCTTCTTGAGCCAGAAGATGGC 8707695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532660270080