Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq9 203 6e-47 >seq9 Length=31548187 Score = 203 bits (224), Expect = 6e-47 Identities = 497/740 (67%), Gaps = 32/740 (4%) Strand=Plus/Plus Query 25595 ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGAT 25654 ||||| | || ||||| || ||||| || || || ||| |||||| || | || | Sbjct 1132266 ACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCCTCCAGGT 1132325 Query 25655 TCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCG 25714 ||| || |||||| || ||||| |||||||| |||||||| ||||||| Sbjct 1132326 TCATGTCCGACGTGCAGGTCGCCGAGGCGCGCGCCTTCTACGGCTTCCAGATCGCCATCG 1132385 Query 25715 AAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT---GACGTACATTACAGACGTCG 25771 | || | ||||| ||| |||| | ||||||| | ||||||||| |||| || Sbjct 1132386 AGAACATCCACTCGGAGATGTACTC---GCTTCTGCTCGAGACGTACATCCGCGACGACG 1132442 Query 25772 CCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGC 25831 ||||| || || || || | |||||||| | | ||| | | | ||||| Sbjct 1132443 TCGAGAAGGACCGCCTCTTCCGCGCCATCGACACCGTCCCCGCCGTGCGCCGCAAGGCCG 1132502 Query 25832 GGTGGGCCATGAAGTGGATCAACAGCCA-GAGCGCTACGTTTGGCGAGCGGCTGGTAGCC 25890 ||||||||| |||||| || || ||||||| || |||||| || || ||| Sbjct 1132503 ACTGGGCCATGCGATGGATCGACGGCGGCGAGCGCTTCGC----CGAGCGCCTCGTCGCC 1132558 Query 25891 TTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCA 25948 || || ||| || ||||| ||||| ||| ||||| || |||| ||||||||||||||| Sbjct 1132559 TTCGCCTGC-GTCGAGGGGATCTTCTTCTCGGGTTCATTCTGCG-CCATCTTCTGGCTCA 1132616 Query 25949 AGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAG 26007 || || | |||| |||||| || || ||| ||||||||||||||| | | |||||| Sbjct 1132617 AGAAG-CGCGGACTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAG 1132675 Query 26008 GGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCT 26067 ||||||||| | || || |||||||| |||||| | || | | | | | || || Sbjct 1132676 GGTCTCCACTGCGACTTCGCCTGCCTCCTCTAC---GACCTCCTCCGCGGC-AAGCTCGA 1132731 Query 26068 CAAGAGAC-CGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNN 26126 | || || |||| | ||| || || || ||||| ||||||| |||||| Sbjct 1132732 CGAGTCACGCGTCCAGGAGATCGTCGCCGACGCCGTGGACATCGAGAGGGAGTTCGTCTG 1132791 Query 26127 NNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGA 26186 | || |||||| | ||||||||||| ||||| || Sbjct 1132792 CGACGCGCTCCCCGTCGCGCTCGTCGGGATGAACGGCGAGCTCATGAGCCAGTACATCGA 1132851 Query 26187 GTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGA--CTCTACA--GTACG 26241 || || ||||||| ||||| || | ||| || || ||| | |||| || || Sbjct 1132852 GTTCGTCGCCGACCGGCTGCTCATGGC-GCTCGG--GTGCAAGAAGATGTACAACGT-CG 1132907 Query 26242 CCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAA 26301 || ||||||||||||| ||||| ||| || || | || |||||||||||||| || Sbjct 1132908 CC-AACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAG 1132966 Query 26302 AAGAGGGTCGGCGACTATCA 26321 ||| | ||||||||||| || Sbjct 1132967 AAGCGCGTCGGCGACTACCA 1132986 Score = 109 bits (120), Expect = 1e-18 Identities = 265/397 (67%), Gaps = 19/397 (5%) Strand=Plus/Minus Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 |||||||||||||||||| || |||| |||||| || || ||| |||||||||||| Sbjct 8707695 GCCATCTTCTGGCTCAAGAAGCGGGGGCTCATGCCGGGCCTCACCTTCTCCAACGAGCTC 8707636 Query 25993 ATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTG 26052 ||| | | |||||||| || ||| | || || |||||||| |||||| | || | | Sbjct 8707635 ATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTCTAC---GACCTCCTC 8707579 Query 26053 CTCCACAAACCTTCTCAAGAGAC---CGTCTACAGTATCATCAAAGAGGCTGTGGAGATC 26109 | | ||| | || | ||| | |||| | ||| || || || || || ||| Sbjct 8707578 CGCGGCAAGC--TC-GACGAGGCGCGCGTCCGCGAGATCGTCGCCGACGCCGTCGACATC 8707522 Query 26110 GAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTC 26169 |||| |||||| | ||||||||| | ||| Sbjct 8707521 GAGAGGGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGACCTC 8707462 Query 26170 ATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAG 26228 |||||||| ||||| |||| || ||||||| || || || | ||| || || || || Sbjct 8707461 ATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCATGGC-GCTCGG-CT-GCAAG 8707405 Query 26229 A--CTCTACA--GTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGA 26284 | | |||| || |||| ||||| ||||||| ||||| ||| || || | || | Sbjct 8707404 AAGATGTACAACGT-CGCC-AACCCCTTCGACTGGATGGAGCTCATCTCCCTGCAGGGCA 8707347 Query 26285 AGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 ||||||||||||| || ||| | ||||||||||| || Sbjct 8707346 AGACCAACTTCTTCGAGAAGCGCGTCGGCGACTACCA 8707310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844660673280