Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26]
12 sequences; 372,860,283 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq6 134 9e-26
seq4 104 2e-16
seq7 100 2e-15
seq5 96.9 2e-14
seq8 89.7 3e-12
>seq6
Length=37594838
Score = 134 bits (148), Expect = 9e-26
Identities = 115/142 (81%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794
|||| || | |||||||| ||||| || |||||||| || | || |||||||||||||
Sbjct 35688544 ATGCTGTTGTCACTGTTCCTGCATACTTCAATGATTCCCAGAGGCAGGCAACTAAAGATG 35688603
Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854
| || ||||| |||||||||||| | ||||| || ||||| |||||||| || |||
Sbjct 35688604 CAGGTGTTATTGCGGGTCTTAATGTTATGCGTATCATCAATGAGCCAACAGCTGCTGCAA 35688663
Query 474855 TTGCTTATGGTCTTGATAAGAA 474876
|||||||||||||||| |||||
Sbjct 35688664 TTGCTTATGGTCTTGACAAGAA 35688685
Score = 91.5 bits (100), Expect = 1e-12
Identities = 131/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 474680 GTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCA 474739
||||| |||| ||||| | || || || || |||||| || || | | ||
Sbjct 778943 GTTTTGACCAAGATGAAGGAGACAGCTGAATCTTACCTTGGAAAATCTGTTTCCAAGGCT 778884
Query 474740 GTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGA 474799
|| |||||||||||||| ||||| |||||| |||| ||||| || || || ||||| ||
Sbjct 778883 GTGATTACTGTTCCAGCTTATTTCAATGATGCTCAGCGTCAGGCTACCAAGGATGCTGGT 778824
Query 474800 AGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCT 474859
| || || || ||| |||| | | || || |||||||| || || || || || ||
Sbjct 778823 CGCATCGCTGGACTTGATGTCCAAAGAATCATCAATGAACCCACTGCTGCTGCTCTGTCT 778764
Query 474860 TATGG 474864
|||||
Sbjct 778763 TATGG 778759
Score = 89.7 bits (98), Expect = 3e-12
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794
|||| || | |||||||| || || || ||||| || || | || || || || ||||
Sbjct 7772763 ATGCCGTTGTCACTGTTCCTGCCTACTTCAATGACTCCCAGAGGCAGGCCACCAAGGATG 7772822
Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854
| ||| ||||| ||||| ||||| | || || || ||||| ||||| || || ||
Sbjct 7772823 CTGGAGTGATTGCTGGTCTCAATGTCATGCGCATCATCAATGAGCCAACTGCTGCAGCTA 7772882
Query 474855 TTGCTTATGGTCTTGATAAGAA 474876
|||| ||||||||||| |||||
Sbjct 7772883 TTGCCTATGGTCTTGACAAGAA 7772904
>seq4
Length=26741765
Score = 104 bits (114), Expect = 2e-16
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796
||||| |||||||||| ||||| || ||||| || || | |||||| ||||||||
Sbjct 8680747 GCAGTGGTTACTGTTCCTGCATACTTCAATGACTCACAGAGGACAGCAACAAAAGATGCT 8680806
Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856
||| | |||||||| | | ||| | || ||||| |||||||| || || || | |||
Sbjct 8680807 GGACGTATTGCAGGATTGGAAGTTCTCCGCATTATAAATGAACCGACTGCTGCATCCCTT 8680866
Query 474857 GCTTATGGTCTTGATAAGAA 474876
||||||||| |||| |||||
Sbjct 8680867 GCTTATGGTTTTGAGAAGAA 8680886
Score = 93.3 bits (102), Expect = 3e-13
Identities = 208/308 (68%), Gaps = 6/308 (2%)
Strand=Plus/Plus
Query 475877 GTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATT-ATGAC 475935
|| ||| |||| || |||||| | || | ||||| || || ||||| ||| | |||||
Sbjct 8683441 GTTCTTCTTGATGTTACTCCATTGTCTCTTGGTCTGGAGAC-GTTGGGTGGAGTGATGAC 8683499
Query 475936 TAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTA 475995
|| ||||| |||||| || | | || | ||||||| | ||||| |||||
Sbjct 8683500 CAAGATTATTCCCAGAAACACAACACTGCCCACCTCAAAATCAGAGGTATTCTCCACAGC 8683559
Query 475996 TTCTGATAATCAAACAACTGTAACCATCCAAATCTT--TGAAGGTGAAAGAAAATTCACT 476053
| | ||| || |||| ||| || |||| || | | || || ||| | ||
Sbjct 8683560 TGCAGATGGACAGACAAGTGTTGAGAT--AAATGTTCTTCAGGGAGAGAGAGAGTTTGTC 8683617
Query 476054 AAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGA 476113
|| || || ||||||| || | || || || |||||||| || | ||
Sbjct 8683618 CGGGACAACAAGTCTCTTGGAAGCTTCCGCTTGGATGGAATCCCTCCTGCACCACGTGGT 8683677
Query 476114 GTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCT 476173
||||| ||||||||||| | |||||||||||||| ||||||||||| |||| |||||
Sbjct 8683678 GTTCCACAAATTGAAGTCAAGTTTGATATTGATGCCAATGGTATTCTCTCTGTTGCTGCT 8683737
Query 476174 TGTGATAA 476181
||||||
Sbjct 8683738 ATTGATAA 8683745
>seq7
Length=32884216
Score = 100 bits (110), Expect = 2e-15
Identities = 158/222 (71%), Gaps = 6/222 (3%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAA--GTGTACTTTCTTTAGAAACATTATAATCAGCTAGA 480608
|||||| ||||| ||||| || | ||| ||| | | || |||||||| || |||
Sbjct 29193463 ACGAAGGCGGAGGACAAGGTGCAAGGTGGACTCCTTCTGGATG--TTATAATCCGCGAGA 29193406
Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668
|| | ||| ||||| ||||| ||||| || ||||| ||||| || || ||||| ||
Sbjct 29193405 GTACGCCCATCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGTTGCTGGTCCGGAGGGATG 29193346
Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTG-TGAAGTTTC 480727
|| |||||||| |||||||| || ||| ||||| |||| | | | || | |
Sbjct 29193345 CCCTCCTTGTCCTGAATCTTAGCCTTCACATTGTCAATCATATCGGAGGACTCAACCTCC 29193286
Query 480728 AAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|||| | || || || || ||||| ||||||||||| || ||
Sbjct 29193285 AAGG-TGATGGTCTTGCCAGTGAGGGTCTTAACGAATATCTG 29193245
>seq5
Length=38039368
Score = 96.9 bits (106), Expect = 2e-14
Identities = 98/128 (77%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 474737 GCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCG 474796
|| || ||||| |||||||| |||||||||||| |||| ||||| ||||| || |||||
Sbjct 34737615 GCCGTGATTACAGTTCCAGCTTATTTTAATGATGCTCAGCGTCAGGCAACCAAGGATGCT 34737556
Query 474797 GGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTT 474856
|| | ||||| || ||| |||| | || || ||||||||||| || || || ||
Sbjct 34737555 GGTCGCATTGCTGGACTTGATGTCCAGAGGATCATCAATGAACCAACTGCTGCTGCTCTG 34737496
Query 474857 GCTTATGG 474864
|||||||
Sbjct 34737495 TCTTATGG 34737488
>seq8
Length=30429317
Score = 89.7 bits (98), Expect = 3e-12
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 480561 AGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCT 480620
|| ||||| ||||| || ||||| || || ||||| || || || | ||
Sbjct 9003378 AGCACAAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCTGCGAGGGTGCGCCCGTCC 9003437
Query 480621 TCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCT 480680
||||||||||| || ||||| || || || || || ||||| ||||| || ||||||||
Sbjct 9003438 TCAAGTTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCAGGTGGAATACCCTCCTTGTCC 9003497
Query 480681 TGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTT 480740
|||||||| |||||| ||||| || |||| | | || ||||| || ||
Sbjct 9003498 TGAATCTTGGCCTTGACATTGTCAATCGTGTCAGAGGACTCAACCTCTAGGGTTATGGTC 9003557
Query 480741 TTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || ||||| ||||| || || || ||
Sbjct 9003558 TTGCCAGTGAGTGTCTTCACAAAGATCTG 9003586
Score = 87.8 bits (96), Expect = 1e-11
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611
|| || ||||| ||||| || || || ||| || | || || ||||| || ||
Sbjct 25234861 CGGAGGCGGAGGACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCAAGCGTG 25234802
Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671
| |||||| || ||||| ||||| || || ||||| || || || || || |||||
Sbjct 25234801 CGCCCATCTTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGGATTCCC 25234742
Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731
|||||||| || ||||| || ||| ||||| ||||| | | | ||||||
Sbjct 25234741 TCCTTGTCCTGGATCTTGGCCTTTACATTGTCAATGGTATCTGAGGACTCAACCTCAAGG 25234682
Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || || || ||||||||||| || || || ||
Sbjct 25234681 GTTATGGTCTTGCCAGTGAGAGTCTTCACAAAGATCTG 25234644
Score = 86.0 bits (94), Expect = 4e-11
Identities = 113/154 (73%), Gaps = 2/154 (1%)
Strand=Plus/Minus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
||| || || ||||| |||||||| || ||||| || || || || ||||| || |||||
Sbjct 25235024 ATCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGAATCCCCTCCTT 25234965
Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAA 480735
||| || |||||| || || ||||||||||||| | | || |||||||| |
Sbjct 25234964 GTCCTGGATCTTTGCCTTAACGTTGTCAATAGTATCAGAAGACTCAA-CCTCAAGGGTGA 25234906
Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|||| || || || | ||||| || || |||||
Sbjct 25234905 TAGTCTTGCCAGTCAAGGTCTTGACAAAGATTTG 25234872
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268178685261776
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |