Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq4 275 7e-69 seq1 141 1e-28 seq5 114 1e-20 seq11 98.7 1e-15 seq7 86.0 7e-12 >seq4 Length=26741765 Score = 275 bits (304), Expect = 7e-69 Identities = 277/360 (77%), Gaps = 0/360 (0%) Strand=Plus/Plus Query 161503 GAAACCACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACC 161562 |||||||| |||||||| || || | ||||||| || |||||||| |||||||| Sbjct 12116219 GAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACT 12116278 Query 161563 TACAACATCGTTGCTGCCCACGGGTACTTCGGTCGTCTGATTTTCCAATACGCTTCCTTC 161622 || || || || || || || || || || || || | || |||||||| ||| || Sbjct 12116279 TATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTT 12116338 Query 161623 AACAACTCCCGCTCGCTGCACTTCTTCCTTGCTGCTTGGCCTGTTGTTGGCATCTGGTTC 161682 |||||||| || || | ||||||||| | |||||||||||||| || || || |||||| Sbjct 12116339 AACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTC 12116398 Query 161683 ACTGCACTGGGCGTAAGCACCATGGCATTCAACCTGAATGGTTTCAACTTCAACCAGTCT 161742 ||||| | || | || || ||||| ||||| || || || ||||| |||||||| ||| Sbjct 12116399 ACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCT 12116458 Query 161743 ATCGTTGATAGTCAGGGTAAAGTTATCAACACCTGGGCAGACGTTCTCAACCGTGCTGGT 161802 | |||||||| || ||| ||||| || || ||||| || | ||||||||||| | Sbjct 12116459 GTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAAT 12116518 Query 161803 CTTGGCATGGAAGTGATGCACGAGCGCAATGCTCACAACTTCCCTCTTGACCTTGCTGCT 161862 ||||| |||||||| |||||||| || |||||||||||||||||||| ||||| |||||| Sbjct 12116519 CTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 12116578 Score = 260 bits (288), Expect = 2e-64 Identities = 304/405 (75%), Gaps = 4/405 (1%) Strand=Plus/Minus Query 161214 TGAGTGGGAACTTTCTTACCGTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGC 161273 |||||||||||| || || |||||| || |||||||||||| || ||||| || || Sbjct 188886 TGAGTGGGAACTGAGTT-CCATCTGGGTATACGTCCTTGGATTACTGTTGCATATTCAGC 188828 Query 161274 TCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTC 161333 |||||| || || || | || || ||| || | || ||| | |||||||| |||||| Sbjct 188827 TCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTC 188768 Query 161334 TGATGCAATGCCTCTGGGCATCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGA 161393 ||||| |||||| | || || ||| |||| ||||||| ||| |||| ||||| ||||| Sbjct 188767 TGATGGTATGCCTTTAGGAATATCTTGTACTTTCAACTTTATGATTGTATTCCAGGCAGA 188708 Query 161394 GCACAACATTCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTC 161453 ||| ||||| || ||||| || || || ||| | || ||||| ||||| || ||||||| Sbjct 188707 GCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTATGCGGTTC 188648 Query 161454 TCTGTTC-AGTGCAATGCACGGTTCGCTGGTTACCTCTTCGCTGGTTC-GTGAAACCACC 161511 || ||| ||||| ||||| ||||| |||| ||||| | | | |||| | |||||||| Sbjct 188647 CCTATTCAAGTGCTATGCATGGTTCTTTGGTAACCTC-TAGTTTGTTCAGGGAAACCACT 188589 Query 161512 GAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATC 161571 |||||||| || || | ||||||| || |||||||| |||||||| || || || Sbjct 188588 GAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATT 188529 Query 161572 GTTGCTGCCCACGGGTACTTCGGTCGTCTGATTTTCCAATACGCT 161616 || || || || || || || || || | || |||||||| ||| Sbjct 188528 GTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCT 188484 >seq1 Length=46529941 Score = 141 bits (156), Expect = 1e-28 Identities = 151/196 (77%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 162117 TTTGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGA 162176 |||||| | | ||||||||| | ||| |||||||| |||||||| || |||||||| Sbjct 26428812 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGC 26428753 Query 162177 CTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTC 162236 || | |||||||| ||||||| | ||| | || |||||| |||| ||||| ||||| Sbjct 26428752 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 26428693 Query 162237 GTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTG-AGGGTGCAAACTTTCT 162295 || || ||||||||| || ||| | |||||||||||| | | ||| ||||| ||||| Sbjct 26428692 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA--TTTCT 26428635 Query 162296 T-ACTGCGGCAGTTTC 162310 | || || |||||||| Sbjct 26428634 TAACCGCAGCAGTTTC 26428619 >seq5 Length=38039368 Score = 114 bits (126), Expect = 1e-20 Identities = 125/165 (76%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 161677 TGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTGAATGGTTTCAACTTCAAC 161736 ||||||||||| | || | || || ||||| ||||| || || || ||||| |||||| Sbjct 16640593 TGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAACGGGTTCAATTTCAAC 16640534 Query 161737 CAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACACCTGGGCAGACGTTCTCAACCGT 161796 || ||| | |||||||| || ||| ||||| | || ||||| || | |||||||| Sbjct 16640533 CA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTTATACTTGGGCTGATATCATCAACCGT 16640475 Query 161797 GCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATGCTCACAAC 161841 || ||||| |||||||| |||||||| || ||||||||| || Sbjct 16640474 GCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCACCAC 16640430 >seq11 Length=27185770 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 161789 TCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATGCTCACAACTTCCCTC 161848 ||||||||||| |||||| |||||||| |||||||| || ||||||||||||||||||| Sbjct 25910912 TCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTC 25910853 Query 161849 TTGACCTTGCTGCT 161862 | ||||| |||||| Sbjct 25910852 TAGACCTAGCTGCT 25910839 >seq7 Length=32884216 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 158341 TACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTACTCGTGCCGTGCAGGC 158400 |||||||| ||||| || |||||||| || ||||| || ||||||||||| || ||| Sbjct 17766106 TACATCCTGGACGCGGCCGAGGAAGCCGGCGTCGACCTGCCCTACTCGTGCCGCGCCGGC 17766165 Query 158401 GCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTCC 158460 || || || | || || || || ||||| ||| ||| ||||| |||||||| Sbjct 17766166 GCGTGCTCCACCTGCGCCGGCAAGGTCGTCGAGGGCGGCGTCGACCAGTCGGACCAGTCG 17766225 Query 158461 TTCCTGGACGATGACCA 158477 ||||| ||||| | ||| Sbjct 17766226 TTCCTCGACGACGCCCA 17766242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547747117837920