Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq4 233 6e-57 >seq4 Length=26741765 Score = 233 bits (258), Expect = 6e-57 Identities = 299/404 (74%), Gaps = 6/404 (1%) Strand=Plus/Plus Query 18075 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTC 18134 |||||||| |||||||| | || ||||| || |||||||| || ||||||||||| ||| Sbjct 188482 CTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTC 188541 Query 18135 TCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCT- 18193 ||||| ||||| |||||| | || || | || ||| || ||||| ||||| || Sbjct 188542 TCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCTG 188601 Query 18194 AATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGC-GAATAAAGCTCCACCGAATA 18252 || || || | || || | | || ||||||||| ||||| | || | |||| Sbjct 188602 AACAAACTAG-AGGTTACCAAAGAACCATGCATAGCACTTGAATAGGGAACCGCATAATA 188660 Query 18253 CCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATA 18312 | || || ||||| | ||| || || |||||||||||||| || || || || ||||||| Sbjct 188661 CACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATA 188720 Query 18313 CGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTT 18372 | | ||| || |||||||||| || || | ||||||||||||||||||||| |||| Sbjct 188721 CAATCATAAAGTTGAAAGTACAAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTT 188780 Query 18373 GTCCAAAAGGATAAA-CGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAATAAGCA 18431 | |||| ||| |||| | ||||| || | | |||||||| || || || ||||| ||| Sbjct 188781 GACCAATAGGGTAAATCAAGAAA-ACAGCGGTAGCAGCTGCAACAGGAGCTGAATATGCA 188839 Query 18432 ACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCA 18475 ||| |||||| || || ||||| || | |||| |||||||| Sbjct 188840 ACAGTAATCCAAGGACGTATACCCAG-ATGGAACTCAGTTCCCA 188882 Score = 214 bits (236), Expect = 5e-51 Identities = 266/363 (73%), Gaps = 6/363 (2%) Strand=Plus/Minus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||| ||||||||||| |||||||| ||||| | ||||| || Sbjct 12116575 AGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATT 12116516 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | ||||| | |||||||| ||| | || | ||| | | | ||||| Sbjct 12116515 AGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACA-- 12116458 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||||||| |||||||| || ||||| ||||||||||| || || | || || Sbjct 12116457 -GATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGT 12116399 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 | ||| || | || |||||||||||||||||||| |||| | | ||||| Sbjct 12116398 GAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 12116339 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 ||| |||||||| |||||||| | || ||||| || |||||||| || ||||||||||| Sbjct 12116338 AAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATA 12116279 Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190 |||||||| ||||| |||||| | || || | || ||| || ||||| ||||| Sbjct 12116278 AGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTC 12116219 Query 18191 TCT 18193 || Sbjct 12116218 CCT 12116216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151318378437128