Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq4 264 1e-65 seq1 100 4e-16 seq11 89.7 7e-13 >seq4 Length=26741765 Score = 264 bits (292), Expect = 1e-65 Identities = 304/404 (75%), Gaps = 4/404 (1%) Strand=Plus/Plus Query 103418 GCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTATGTCTCT 103477 || ||||||||||| || || || || |||||||||||||| || || || || |||||| Sbjct 188485 GCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTCTCT 188544 Query 103478 TCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCTCAC-GAAC 103536 |||||||| || || ||||||| | || |||||| ||||||| || || | |||| Sbjct 188545 TCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCTGAAC 188604 Query 103537 CAGCGAGGACGTAACAAGCGAACCGTGCATAGCACT-GAACAGTGAACCACCGAAGACTC 103595 | | || | || || | ||||| ||||||||||| ||| || ||||| | || || | Sbjct 188605 AAACTAG-AGGTTACCAAAGAACCATGCATAGCACTTGAATAGGGAACCGCATAATACAC 188663 Query 103596 CAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGAAGACCA 103655 |||| || || | |||||| || || ||||| || |||||||| || || ||||| || | Sbjct 188664 CAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATACAA 188723 Query 103656 GCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAACCTTGAC 103715 ||| ||||||| || | || || || ||||||||| |||| ||||| ||||||| Sbjct 188724 TCATAAAGTTGAAAGTACAAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGAC 188783 Query 103716 CAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATGCGACAC 103775 ||| ||||| | |||||| || |||| ||||| ||||||||||| || ||||| ||| Sbjct 188784 CAATAGGGTAAATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAACAG 188843 Query 103776 AGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCA 103819 ||||| || || || |||||| || | || |||||||||| Sbjct 188844 TAATCCAAGGACGTATACCCAGATGG-AACTCAGTTCCCACTCA 188886 Score = 206 bits (228), Expect = 3e-48 Identities = 256/360 (71%), Gaps = 0/360 (0%) Strand=Plus/Minus Query 103171 AGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAG 103230 |||||| ||||| || |||||||||||||| ||||| |||||||| ||||||||||| || Sbjct 12116578 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 12116519 Query 103231 ACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGAT 103290 | ||| ||||||| | || ||||| || || | || ||||| || | ||||| | Sbjct 12116518 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTAC 12116459 Query 103291 GGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGT 103350 || |||||||| ||||||||||| || ||||| ||||| || |||| ||| | || || Sbjct 12116458 AGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGT 12116399 Query 103351 GAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGTT 103410 |||||| || || ||||| || | |||||||| Sbjct 12116398 GAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 12116339 Query 103411 GAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTA 103470 || || ||||||||||| || || || || |||||||||||||| || || || || Sbjct 12116338 AAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATA 12116279 Query 103471 TGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCTC 103530 |||||||||||||| || || ||||||| | || |||||| ||||||| || || Sbjct 12116278 AGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTC 12116219 >seq1 Length=46529941 Score = 100 bits (110), Expect = 4e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 102528 TGACACAGCAGCTGTAAGGAAATTAGCACCTTCAAGGTAACTAGACGCAAGCCCGTGGGT 102587 ||| || || || || | |||||| |||||| | || | ||| | || ||||| Sbjct 26428618 TGAAACTGCTGCGGTTAAGAAATTGCAACCTTCCAAATAGGAACTCGCCAATCCATGGGT 26428677 Query 102588 ATACCAGGAAGTAGCAAACGTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGT 102647 |||||| ||||| |||| || || || |||| ||| || || | |||| ||||||| Sbjct 26428678 ATACCAAGAAGTTACAAAAGTTGTCCCTGTAAACCAACCTCCTAAAGCGAAATAAGCACA 26428737 Query 102648 GGGAAAAAGAAGTAGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTC 102707 |||||||| | ||| |||||||| || ||||| ||||| || || | | | |||||| Sbjct 26428738 AGGAAAAAGCAATAGGCCAGACCATCCTACAAAAACAAAACGGTCCCTTCGTAACCAGTC 26428797 Query 102708 ATCCAGGATGTCAAA 102722 |||| || ||||| Sbjct 26428798 GTCCATAATATCAAA 26428812 >seq11 Length=27185770 Score = 89.7 bits (98), Expect = 7e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 103171 AGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAG 103230 |||||| ||||| || |||||||||||||| ||||| |||||||| ||||||||||| || Sbjct 25910839 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 25910898 Query 103231 ACCAGCGCGGTTGA 103244 | ||| ||||||| Sbjct 25910899 ATTAGCACGGTTGA 25910912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633513504972960