Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq4 228 2e-55 >seq4 Length=26741765 Score = 228 bits (252), Expect = 2e-55 Identities = 246/326 (75%), Gaps = 0/326 (0%) Strand=Plus/Minus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || ||||||||||| || || || || ||||| || || | ||||| || Sbjct 12116574 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 12116515 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 |||||||| | || |||||||| || || || || | || | | | | | |||| Sbjct 12116514 GCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGAT 12116455 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650 ||||| || ||||| || || | ||||||||||| ||| | || | |||| ||| Sbjct 12116454 TGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAAC 12116395 Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAG 21710 ||||| ||||| |||||||| ||||| | ||||| || | | ||| || || ||||| Sbjct 12116394 CAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAA 12116335 Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTC 21770 ||||||||||||||||| | || |||||||| || ||||| || |||||||| |||||| Sbjct 12116334 CTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTC 12116275 Query 21771 TCTTCCTCTTGACCAAACTTGTAACC 21796 ||||||||||||||||| ||||||| Sbjct 12116274 TCTTCCTCTTGACCAAATCTGTAACC 12116249 Score = 226 bits (250), Expect = 8e-55 Identities = 297/406 (73%), Gaps = 4/406 (1%) Strand=Plus/Plus Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTC 21770 ||||||||||||||||| | || |||||||| || ||||| || |||||||| |||||| Sbjct 188482 CTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTC 188541 Query 21771 TCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCAC-G 21829 ||||||||||||||||| ||||||| | || || | | |||||| || || | | Sbjct 188542 TCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCTG 188601 Query 21830 AATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGA-GAACAAACTCCCACCAAATA 21888 || | | || || |||| ||| ||||||||| ||| | || | |||| Sbjct 188602 AACAAACTA-GAGGTTACCAAAGAACCATGCATAGCACTTGAATAGGGAACCGCATAATA 188660 Query 21889 CGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACA 21948 | || || ||||| | ||||||||| ||||||||||| || || ||||| |||||||| | Sbjct 188661 CACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATA 188720 Query 21949 CCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCT 22008 | | ||| ||||||| || | ||||| || || |||||| ||||||| ||| || | Sbjct 188721 CAATCATAAAGTTGAAAGTACAAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTT 188780 Query 22009 GTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAA 22068 | |||| || |||| | ||| ||||| || ||||| || |||||||| || || |||| Sbjct 188781 GACCAATAGGGTAAATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAA 188840 Query 22069 CAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTC 22114 || ||||| || | || || || | | || ||||||||||| Sbjct 188841 CAGTAATCCAAGGACGTATACCCAGATG-GAACTCAGTTCCCACTC 188885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146207979165360