Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq5 125 4e-24 seq9 91.5 7e-14 >seq5 Length=38039368 Score = 125 bits (138), Expect = 4e-24 Identities = 162/221 (73%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123 |||||||||| || |||||||||||||| || || | |||||| ||||||||||| || Sbjct 36491244 TACCTTTTCTCTTGCCTCCACCTTGATCAACATAACGTGCAGTATCATTGAAAACACGCA 36491185 Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183 ||| ||||| | ||| | || ||| ||||| | |||| | || || | || Sbjct 36491184 GCATGGGAACAATCCCATTAGATGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCTC 36491125 Query 26184 TAATATCGTGAGCATGA-ATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCT 26242 |||||| |||| ||| | ||| ||||||||||| ||||| || | ||||| ||| Sbjct 36491124 TAATATTGTGAAT-TGAGAGACCAATTCCACCAGCACATTTGCTTATGGTAGCACATTCT 36491066 Query 26243 GAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 || | ||||| ||||||| | ||||||||| ||||||| Sbjct 36491065 GAGAGAGTATCATAAATTCCCTCAATGCTATCATCTTTCAT 36491025 >seq9 Length=31548187 Score = 91.5 bits (100), Expect = 7e-14 Identities = 159/227 (70%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 26060 AAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACT 26119 || ||||| ||||| || |||||||||||||| || || | ||||| ||||||||||| Sbjct 3307327 AACCTACCCTTTCTCTTGCCTCCACCTTGATCAACATAACGGGCAGTATCATTGAAAACA 3307386 Query 26120 TTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTC 26179 | ||| ||||| | ||| | || ||| ||||| | | | || | | || || Sbjct 3307387 CGTAGCATAGGAACAATCCCATTGGAGGTTCCATTTGTTCCACGGATATAGCTCCCAGTA 3307446 Query 26180 GATCTAATATCGTGAGCATGA-ATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACA 26238 | || ||||| |||| | ||| | ||| ||||| ||||| |||| || | ||||| Sbjct 3307447 GCTCGAATATTGTGAAC-TGAGACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACA 3307505 Query 26239 ATC--TGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 || | ||| ||||| | ||||| | ||||| ||| ||||||| Sbjct 3307506 TTCCTTCAAA--GTATCATAGATTCCCTCAATGCTGTCATCTTTCAT 3307550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039962992900