Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq4 221 1e-52 seq1 116 4e-21 seq9 86.0 7e-12 >seq4 Length=26741765 Score = 221 bits (244), Expect = 1e-52 Identities = 277/379 (73%), Gaps = 1/379 (0%) Strand=Plus/Plus Query 124291 AGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATGTTTC 124350 |||||| |||||||| | || ||||| ||||| || || || || || || || || || Sbjct 188484 AGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTCTC 188543 Query 124351 TTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCTGAT 124410 ||| ||||| || || | ||||| | || || || | || || ||||| |||| Sbjct 188544 TTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCTGAA 188603 Query 124411 TAGAGAAGATGTAACAAGAGAACCATGCATTGCTGA-GAATAAAGATCCTCCGAACATTC 124469 | | ||| || || | |||||||||||| || ||||| || || | || | | Sbjct 188604 CAAACTAGAGGTTACCAAAGAACCATGCATAGCACTTGAATAGGGAACCGCATAATACAC 188663 Query 124470 CTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACGA 124529 | ||||| ||| |||||| || |||||||| || |||||||||||||| ||||| || | Sbjct 188664 CAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATACAA 188723 Query 124530 ACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGAC 124589 ||||||||||||||||| || || || | ||||||||||||||||| || |||| Sbjct 188724 TCATAAAGTTGAAAGTACAAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGAC 188783 Query 124590 CAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAACAC 124649 ||| ||||| | ||||| |||||| ||||| | || || |||||||| |||||| Sbjct 188784 CAATAGGGTAAATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAACAG 188843 Query 124650 AGATCCAAGGACGCATTCC 124668 ||||||||||| || || Sbjct 188844 TAATCCAAGGACGTATACC 188862 >seq1 Length=46529941 Score = 116 bits (128), Expect = 4e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 123710 GAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCATGTGTA 123769 || |||||||| |||||||| || || || | ||| ||| || | ||||| ||| Sbjct 26428619 GAAACTGCTGCGGTTAAGAAATTGCAACCTTCCAAATAGGAACTCGCCAATCCATGGGTA 26428678 Query 123770 TACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATACGCACAA 123829 ||||| || || || || || || ||| |||||||| || | | | ||| |||||| Sbjct 26428679 TACCAAGAAGTTACAAAAGTTGTCCCTGTAAACCAACCTCCTAAAGCGAAATAAGCACAA 26428738 Query 123830 GGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAACCAGTCG 123889 || | ||| || || ||||||||||||| || |||||||| || || |||||||||| Sbjct 26428739 GGAAAAAGCAATAGGCCAGACCATCCTACAAAAACAAAACGGTCCCTTCGTAACCAGTCG 26428798 Query 123890 TCAAGAACATCAAA 123903 || | || |||||| Sbjct 26428799 TCCATAATATCAAA 26428812 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 |||||||||||||| | |||||||| || || ||||||||||| ||||||||||| || Sbjct 32083480 ACACCAATAGGACCCATTCCAGGACCACCCCCACCATGTGGAATGCAGAATGTCTTGTGA 32083421 Query 138243 AAATTTAGATGACATACATCTGCACCA 138269 | || || || || |||||||| ||| Sbjct 32083420 AGGTTAAGGTGGCAAACATCTGCTCCA 32083394 >seq9 Length=31548187 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 |||||||||||||| | |||||||| || || ||||||||||| ||||||||||| || Sbjct 24620698 ACACCAATAGGACCCATTCCAGGACCACCCCCACCATGTGGAATGCAGAATGTCTTGTGA 24620757 Query 138243 AAATTTAGATGACATACATCTGCACCA 138269 | || || || || |||||||| ||| Sbjct 24620758 AGGTTAAGGTGGCAAACATCTGCTCCA 24620784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578998313150240