Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq4 230 3e-55 seq1 120 4e-22 >seq4 Length=26741765 Score = 230 bits (254), Expect = 3e-55 Identities = 295/404 (73%), Gaps = 2/404 (0%) Strand=Plus/Plus Query 26976 AGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTAGGTCTC 27035 ||||||||||||||| || || || || || ||||| || || || || || || ||||| Sbjct 188484 AGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTCTC 188543 Query 27036 TTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCTCACGGAC 27095 ||| |||||||| || | ||||| | || || || ||||||| || || | || Sbjct 188544 TTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCTGAA 188603 Query 27096 GAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGA-GAAAAGAGATCCACCGAATACCC 27154 | ||| || |||| | || ||||||||| ||| || || || | ||||| | Sbjct 188604 CAAACTAGAGGTTACCAAAGAACCATGCATAGCACTTGAATAGGGAACCGCATAATACAC 188663 Query 27155 CAGCAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAATACAA 27214 |||| ||||| | |||||| || || ||||||||||| || || |||||||||||||||| Sbjct 188664 CAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATACAA 188723 Query 27215 GCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACCTTGAC 27274 ||| |||| ||||||| ||| || || | ||||||| |||| |||||| ||||||| Sbjct 188724 TCATAAAGTTGAAAGTACAAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGAC 188783 Query 27275 CGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATGCTACAC 27334 | | ||| || | | ||| || || | ||||| || || ||||| |||||||| ||| Sbjct 188784 CAATAGGGTAAATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAACAG 188843 Query 27335 AGATCCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCA 27378 ||||| ||||| ||||| | | | | |||||||||||| Sbjct 188844 TAATCCAAGGACGTATACCCAGATG-GAACTCAGTTCCCACTCA 188886 Score = 217 bits (240), Expect = 2e-51 Identities = 246/330 (75%), Gaps = 0/330 (0%) Strand=Plus/Minus Query 26730 AGCAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAAG 26789 |||||| || || | || || || || || || | |||||| || || || | ||||| Sbjct 12116578 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 12116519 Query 26790 ACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCAC 26849 | ||||||||||| | || |||||||| || | || ||||| || ||||| || Sbjct 12116518 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTAC 12116459 Query 26850 AGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGT 26909 ||| || ||||| ||||| ||||| |||||||||||||| || | ||| | || || Sbjct 12116458 AGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGT 12116399 Query 26910 GAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTT 26969 |||||| || || || || ||||| ||||| | ||||||||| || ||||| |||||||| Sbjct 12116398 GAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 12116339 Query 26970 GAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTA 27029 || ||||||||||||||| || || || || || ||||| || || || || || || Sbjct 12116338 AAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATA 12116279 Query 27030 GGTCTCTTCTTCTTGACCGAACTTATAACC 27059 |||||||| |||||||| || | ||||| Sbjct 12116278 AGTCTCTTCCTCTTGACCAAATCTGTAACC 12116249 >seq1 Length=46529941 Score = 120 bits (132), Expect = 4e-22 Identities = 145/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 24210 GAGACAGCTGCCGT-AAGAAAGTTAGCACCCTCAAGATAGGAACTAGCAAGTCCATGGGT 24268 || || ||||| || |||||| || ||| || | ||||||||| || | ||||||||| Sbjct 26428619 GAAACTGCTGCGGTTAAGAAA-TTGCAACCTTCCAAATAGGAACTCGCCAATCCATGGGT 26428677 Query 24269 GTACCAACTCGTAACAAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAGCAGT 24328 |||||| || ||||||| ||| || |||| |||||| || | || | ||||||| Sbjct 26428678 ATACCAAGAAGTTACAAAAGTTGTCCCTGTAAACCAACCTCCTAAAGCGAAATAAGCACA 26428737 Query 24329 GGGAAGAAGTAGGAGTCCAGACCAACCCACAAAGACAAAGCGATCCCGTTTAACCCAGTC 24388 |||| ||| | || |||||||| || ||||| ||||| || |||| | | |||||| Sbjct 26428738 AGGAAAAAGCAATAGGCCAGACCATCCTACAAAAACAAAACGGTCCCTTCGTAACCAGTC 26428797 Query 24389 GTCCAAGATGTCAAA 24403 ||||| || ||||| Sbjct 26428798 GTCCATAATATCAAA 26428812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665494300175840