Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq9 132 6e-26 >seq9 Length=31548187 Score = 132 bits (146), Expect = 6e-26 Identities = 118/148 (80%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 65070 CTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATT 65129 ||||||||||||||| | || || || || || ||||| ||||||||||| || ||||| Sbjct 1132537 CTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGGATCTTCTTCTCGGGTTCATT 1132596 Query 65130 CTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 |||||| || | ||| | |||||||| || |||||||| ||||| |||||| || || Sbjct 1132597 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCGGGCCTCACCTTCTCCAACGA 1132656 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || ||||| || |||||||||||| Sbjct 1132657 GCTCATCTCCCGCGACGAGGGTCTCCAC 1132684 Score = 104 bits (114), Expect = 3e-17 Identities = 215/318 (68%), Gaps = 4/318 (1%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || |||||||||||| || ||| |||| || ||| || || || ||||| || Sbjct 31090596 GGGGCCAAGATCCCCAAGGGATGCCTGCTCGTCGGCCCGCCCGGAACCGGGAAGACACTG 31090537 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 || || || ||| |||| || || | || |||||| || ||| | || | | Sbjct 31090536 CTGGCGCGTGCCGTCGCCGGGGAGGCCGGAGTGCCATTCTTCTCCTGCGCCGCGTCCGAG 31090477 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || || ||| |||| || ||||| |||||| ||||| | || || || || | ||| Sbjct 31090476 TTCGTTGAGCTGTTCGTCGGTGTCGGTGCCTCCAGGGTCAGGGACCTGTTCGAGAAGGCC 31090417 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 | || || || || |||||||||||||| |||||||| || || | ||| || Sbjct 31090416 AAGGCCAAGGCCCCTTGCATCGTCTTCATTGATGAAATTGATGCCGTCGGGAGGCAGCGT 31090357 Query 175516 AGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCA 175573 | ||||| | | | | | |||||| ||||| || || || ||||| || || | | Sbjct 31090356 GGTGCTGGGCTCGGAGG--GGGAAATGATGAGAGGGAGCAGACCATTAACCAGCTCTTGA 31090299 Query 175574 CCGAGATGGATGGCTTTG 175591 | ||||||||||| |||| Sbjct 31090298 CTGAGATGGATGGATTTG 31090281 Score = 102 bits (112), Expect = 1e-16 Identities = 191/281 (68%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||||||||||||||| || || |||||| ||||||| |||||||| | | || Sbjct 28186087 TTTGTGGAGATGTTTGTCGGAGTTGGTGCCTCCCGGGTTCGTGATCTCTTCAAGAAGGCA 28186028 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || ||| || || || || || ||||||| |||||||| || || | |||| | Sbjct 28186027 AAGGAGAATGCTCCTTGCATAGTATTTGTTGATGAAATTGATGCTGTTGGGAGGCAAAGA 28185968 Query 175516 AGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACC 175575 | | ||| | | |||||| || || || || || | ||||| | || || Sbjct 28185967 GGGACAGGTATTGGTGGTGGAAATGATGAAAGGGAGCAGACTTTGAATCAGTTGCTGACT 28185908 Query 175576 GAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTG 175635 ||||||||||| ||||| | ||||| || | |||||||| ||||| || | | Sbjct 28185907 GAGATGGATGGTTTTGAGGGGAACACTGGAATCATTGTTATTGCTGCCACCAACAGGGCT 28185848 Query 175636 GATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGA 175676 |||||||| ||| || | || | || || |||||||| Sbjct 28185847 GATATCCTGGATTCTGCTTTACTCAGACCTGGACGTTTTGA 28185807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569510514560