Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq4 250 3e-61 seq1 113 5e-20 seq5 82.4 9e-11 >seq4 Length=26741765 Score = 250 bits (276), Expect = 3e-61 Identities = 273/363 (75%), Gaps = 0/363 (0%) Strand=Plus/Plus Query 166393 AGAGAGACGACTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAA 166452 || || || ||||||| |||||| || | ||||||| || || ||||| ||||| Sbjct 12116216 AGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAG 12116275 Query 166453 ACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCA 166512 || || || || || |||||||||||||| || || || || ||||||||||| ||| Sbjct 12116276 ACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGT 12116335 Query 166513 TTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGG 166572 || |||||||| || || || ||||||||| | ||||| |||||||| || || || ||| Sbjct 12116336 TTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGG 12116395 Query 166573 TTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAG 166632 ||||| || | || | || ||||| ||||| || ||||| ||||| |||||||| Sbjct 12116396 TTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAA 12116455 Query 166633 TCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTTCTTAACCGCGCT 166692 || | ||||| | || ||||| || | || || ||||| ||| | | ||||| ||| Sbjct 12116456 TCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCT 12116515 Query 166693 GGTCTCGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCCCTCGACCTCGCT 166752 ||| ||||||||||| ||||| || ||||| || ||||||||||| || ||||| ||| Sbjct 12116516 AATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCT 12116575 Query 166753 GCT 166755 ||| Sbjct 12116576 GCT 12116578 Score = 230 bits (254), Expect = 3e-55 Identities = 295/404 (73%), Gaps = 2/404 (0%) Strand=Plus/Minus Query 166107 TGAGTGGGAACTGTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGC 166166 ||||||||||||| || || ||| ||||| ||||| ||||| |||||| || ||||| Sbjct 188886 TGAGTGGGAACTGAGTT-CCATCTGGGTATACGTCCTTGGATTACTGTTGCATATTCAGC 188828 Query 166167 ACCAGTCGCTGCTGCGAGTGCAGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTC 166226 || || || ||||| | || || ||| | | || ||| | |||||||| |||||||| Sbjct 188827 TCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTC 188768 Query 166227 TGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGA 166286 ||||| ||||| | ||||| || | || ||||||| ||| | || ||||| || || Sbjct 188767 TGATGGTATGCCTTTAGGAATATCTTGTACTTTCAACTTTATGATTGTATTCCAGGCAGA 188708 Query 166287 GCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAG 166346 ||| || || || |||||||| || || ||| | || || ||||| ||||| | || Sbjct 188707 GCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTATGCGGTTC 188648 Query 166347 TTTGTT-TAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTG 166405 | || ||||||||||| || |||||| || ||| | | | || || || |||| Sbjct 188647 CCTATTCAAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGTTCAGGGAAACCACTG 188588 Query 166406 AAACCGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCG 166465 ||| |||||| || | ||||||| || || ||||| ||||| || || || || | Sbjct 188587 AAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTG 188528 Query 166466 TAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCT 166509 | |||||||||||||| || || || || ||||||||||| ||| Sbjct 188527 TGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCT 188484 >seq1 Length=46529941 Score = 113 bits (124), Expect = 5e-20 Identities = 115/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 167014 TTTGATGTCCTCGATGACTGGCTTAAAAGGGATCGTTTTGTTTTTGTTGGCTGGTCTGGA 167073 |||||| | | || |||||| | |||||| |||||||||||||| || |||||||| Sbjct 26428812 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGC 26428753 Query 167074 CTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTC 167133 || | |||||||| ||||||| | ||| | || |||||| |||| ||||| ||||| Sbjct 26428752 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 26428693 Query 167134 GTCACGAGTTGGTATACTCATGGACTCGCG 167163 || || ||||||||| |||||| | ||| Sbjct 26428692 GTAACTTCTTGGTATACCCATGGATTGGCG 26428663 >seq5 Length=38039368 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 18128 TTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAAT 18187 |||||||||||||||| || ||||| ||| |||||| || ||||||||||||| ||| Sbjct 822149 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGTTGTTAACTGACTGGTCGTAGGTTCGAAT 822090 Query 18188 CCTACCTGGGGAG 18200 ||||| ||||||| Sbjct 822089 CCTACTTGGGGAG 822077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561247915812800