Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq4 228 2e-55 >seq4 Length=26741765 Score = 228 bits (252), Expect = 2e-55 Identities = 246/326 (75%), Gaps = 0/326 (0%) Strand=Plus/Plus Query 41891 GGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTT 41950 ||||||| ||||||||||||||||||||||| |||||||| || ||||| || |||||| Sbjct 12116249 GGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTT 12116308 Query 41951 GGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTT 42010 || || | ||||||||||||||||| ||||| || || ||| | | || ||||| | Sbjct 12116309 GGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTG 12116368 Query 42011 GCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTC 42070 ||||| |||||||| ||||| |||||||| |||| | || | ||| ||||||||| Sbjct 12116369 GCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTC 12116428 Query 42071 AACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAAC 42130 || | || || ||||| || ||||||||| | | | | | || | || || || Sbjct 12116429 AATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAAT 12116488 Query 42131 ACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAAC 42190 || |||||||| || | |||||||| || ||||| | || || ||||| || || || Sbjct 12116489 ACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAAT 12116548 Query 42191 GCACACAACTTCCCGCTTGACCTTGC 42216 || ||||||||||| || ||||| || Sbjct 12116549 GCTCACAACTTCCCTCTAGACCTAGC 12116574 Score = 226 bits (250), Expect = 8e-55 Identities = 297/406 (73%), Gaps = 4/406 (1%) Strand=Plus/Minus Query 41573 GAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCT 41632 ||||||||||| || | | || || || | || ||||| |||||| || || ||| Sbjct 188885 GAGTGGGAACTGAGTTC-CATCTGGGTATACGTCCTTGGATTACTGTTGCATATTCAGCT 188827 Query 41633 CCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCT 41692 ||||| || ||||| || ||||| ||| | |||| || |||| || || ||| ||| Sbjct 188826 CCTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCT 188767 Query 41693 GATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTCCAGGCTGAG 41752 |||| |||||| || || ||||| | || ||||||| ||| | || |||||||| ||| Sbjct 188766 GATGGTATGCCTTTAGGAATATCTTGTACTTTCAACTTTATGATTGTATTCCAGGCAGAG 188707 Query 41753 CACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTTGGTGGGAGT 41812 || || || ||||||||||| ||||||||| | ||||| || || ||||| | || Sbjct 188706 CATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTATGCGGTTCC 188647 Query 41813 TTGTTC-TCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTC-GTGAGACGACTG 41870 | ||| ||||||||| ||| |||| || || | | ||| | || || |||| Sbjct 188646 CTATTCAAGTGCTATGCATGGTTCTTTGGTAACCTC-TAGTTTGTTCAGGGAAACCACTG 188588 Query 41871 AAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTG 41930 || | | || || | ||||||| ||||||||||||||||||||||| ||||||| Sbjct 188587 AAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTG 188528 Query 41931 TTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAG 41976 | || ||||| || |||||||| || | ||||||||||||||||| Sbjct 188527 TGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAG 188482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146214379164448