Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq4 241 4e-59 >seq4 Length=26741765 Score = 241 bits (266), Expect = 4e-59 Identities = 267/356 (75%), Gaps = 0/356 (0%) Strand=Plus/Plus Query 42916 GAAACGACTGAAAACGAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACT 42975 ||||| |||||||||||| ||| | || |||| || ||||||||||| |||||| Sbjct 12116219 GAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACT 12116278 Query 42976 TATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT 43035 ||||| ||||| || || |||||||| ||||| || | |||||||||||||| ||| Sbjct 12116279 TATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTT 12116338 Query 43036 AATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTC 43095 || || ||| ||||| |||||||| | || |||||||| || || |||||||||||| Sbjct 12116339 AACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTC 12116398 Query 43096 ACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCA 43155 ||| || | || | ||||||||||| || || | || || || || || |||||||| Sbjct 12116399 ACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCT 12116458 Query 43156 CTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAAC 43215 | ||||||| || || || || ||||||||||||||| | || ||||| || Sbjct 12116459 GTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAAT 12116518 Query 43216 CTTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAACTTCCCGCTTGATCTTGC 43271 ||||| | || || |||||||| || ||||| || |||||||| || || || || Sbjct 12116519 CTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGC 12116574 Score = 226 bits (250), Expect = 8e-55 Identities = 295/403 (73%), Gaps = 4/403 (1%) Strand=Plus/Minus Query 42628 GAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCC 42687 || |||||||| || || || || || | || ||||| |||||| || || || Sbjct 188885 GAGTGGGAACTGA-GTTCCATCTGGGTATACGTCCTTGGATTACTGTTGCATATTCAGCT 188827 Query 42688 CCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCA 42747 ||||| || || || || || || ||| | | || || |||| ||||| ||| || Sbjct 188826 CCTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCT 188767 Query 42748 GATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAA 42807 ||||| |||||| | || || || |||| |||||||| ||| | || |||||||| || Sbjct 188766 GATGGTATGCCTTTAGGAATATCTTGTACTTTCAACTTTATGATTGTATTCCAGGCAGAG 188707 Query 42808 CATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCG 42867 |||||||| ||||||||||| || || ||| | ||||| || || ||||| | || || Sbjct 188706 CATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTATGCGGTTCC 188647 Query 42868 TTGTTC-TCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGC-GTGAAACGACTG 42925 | ||| |||||||||||| | | || |||||| | |||| | | ||||| |||| Sbjct 188646 CTATTCAAGTGCTATGCATGGTTCTTTGGTAACCTCTAGT-TTGTTCAGGGAAACCACTG 188588 Query 42926 AAAACGAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTG 42985 |||||||| ||| | || |||| || ||||||||||| ||||||||||| |||| Sbjct 188587 AAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTG 188528 Query 42986 TTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGC 43028 | || || |||||||| ||||| || | |||||||||||||| Sbjct 188527 TGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGC 188485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143532779546576