Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq4 197 4e-46 >seq4 Length=26741765 Score = 197 bits (218), Expect = 4e-46 Identities = 293/411 (71%), Gaps = 6/411 (1%) Strand=Plus/Plus Query 26112 TAAAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTAT 26171 || |||| ||||| || || ||||||| ||||| || || || || || |||||||||| Sbjct 188477 TACAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTAT 188536 Query 26172 ATGTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTT 26231 | |||||||| ||||| ||||| | || || | ||| || | | || || |||| Sbjct 188537 AAGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTT 188596 Query 26232 --CTGCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCA-GCGAAAAGAGCTCCAC 26288 ||| | || | || || |||||| || ||||||||| ||| || | || | Sbjct 188597 CCCTGAACAAACT--AGAGGTTACCAAAGAACCATGCATAGCACTTGAATAGGGAACCGC 188654 Query 26289 CGAAAACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTT 26348 || || ||||| ||||| ||| || ||||| ||||| || || ||||| ||||| | Sbjct 188655 ATAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCT 188714 Query 26349 GGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAAC 26408 ||||||| | ||||||||| ||||||| ||| || || | |||||| |||||| |||| Sbjct 188715 GGAATACAATCATAAAGTTGAAAGTACAAGATATTCCTAAAGGCATACCATCAGAGAAAC 188774 Query 26409 TCCCTTGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTAT 26468 | ||||| || | ||| |||| ||||| || ||| ||| || | | || |||| || Sbjct 188775 TTCCTTGACCAATAGGGTAAATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAAT 188834 Query 26469 ATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACT 26519 |||||||| ||||| || | || || || || || |||||||||| Sbjct 188835 ATGCAACAGTAATCCAAGGACGTATACCCAG-ATGGAACTCAGTTCCCACT 188884 Score = 197 bits (218), Expect = 4e-46 Identities = 236/318 (74%), Gaps = 2/318 (1%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||| ||||||||||| |||||||| ||||| | || || ||| Sbjct 12116574 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAGATTA 12116515 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAAC-ATCTACTACTGA 25995 || ||||| | | ||||||||| ||| || || | | || | ||| ||||| || Sbjct 12116514 GCACGGTTGATGATATCAGCCCAAGTAT-TAATAACGCGACCTTGGCTATCAACTACAGA 12116456 Query 25996 CTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAG 26055 ||||| || || || || ||||| || || ||||| || | ||||| | || || | Sbjct 12116455 TTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAA 12116396 Query 26056 CCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAA 26115 ||| || || || || ||||||| ||| | ||||| || | |||||| ||| ||||| Sbjct 12116395 CCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAA 12116336 Query 26116 ACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGT 26175 ||| ||||| || || ||||||| ||||| || || || || || ||||||||||| || Sbjct 12116335 ACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGT 12116276 Query 26176 CTCTTCATCTTGCCCAAA 26193 |||||| ||||| ||||| Sbjct 12116275 CTCTTCCTCTTGACCAAA 12116258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147711978951040