Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq4 248 1e-60 seq11 98.7 1e-15 seq5 93.3 5e-14 >seq4 Length=26741765 Score = 248 bits (274), Expect = 1e-60 Identities = 297/401 (74%), Gaps = 2/401 (0%) Strand=Plus/Minus Query 155309 AGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCAC 155368 |||||||||| || || ||| || || ||||||||||| ||||||||| || || | Sbjct 188884 AGTGGGAACTGAGTT-CCATCTGGGTATACGTCCTTGGATTACTGTTGCATATTCAGCTC 188826 Query 155369 CAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTG 155428 | || | ||||| |||||| ||| | |||| ||| | |||||||| |||||||| Sbjct 188825 CTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTG 188766 Query 155429 ATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAAC 155488 ||| |||||| | || || ||| ||||||| |||| |||| | || ||||| ||||| | Sbjct 188765 ATGGTATGCCTTTAGGAATATCTTGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGC 188706 Query 155489 ACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTC 155548 | || ||||||||||| || || |||||| | || ||||| ||||| || | || || | Sbjct 188705 ATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTATGCGGTTCCC 188646 Query 155549 TTTTC-TCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAG 155607 | ||| ||||||||| ||||| ||||| || ||| | || | ||||| ||||| Sbjct 188645 TATTCAAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGTTCAGGGAAACCACTGAA 188586 Query 155608 CAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTT 155667 | || ||| || | ||||||| || || ||||| ||||| |||||||| ||||| Sbjct 188585 AACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTG 188526 Query 155668 GCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGC 155708 || |||||||| || || || || | |||||||| ||||| Sbjct 188525 GCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGC 188485 Score = 233 bits (258), Expect = 2e-56 Identities = 270/361 (75%), Gaps = 2/361 (1%) Strand=Plus/Plus Query 155596 GAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACT 155655 ||||| ||||| | || ||| || | ||||||| || || ||||| ||||| ||| Sbjct 12116219 GAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACT 12116278 Query 155656 TATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTTC 155715 ||||| ||||| || |||||||| || || || || | |||||||| ||||| || Sbjct 12116279 TATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTT 12116338 Query 155716 AACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGCA 155775 |||||||| | | | ||||||||| | ||||| |||||||| || | || ||| Sbjct 12116339 AACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTC 12116398 Query 155776 ACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCT 155835 |||||| | ||| | || ||||| ||||| || ||||| ||||| |||||||| ||| Sbjct 12116399 ACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCT 12116458 Query 155836 GTAGTAGAC-GCTAGTGGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGG 155894 ||||| || || | ||| || || ||| ||||| || || | ||||| ||| Sbjct 12116459 GTAGTTGATAGCCAA-GGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAA 12116517 Query 155895 TCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTTGCTGC 155954 |||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||| Sbjct 12116518 TCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGC 12116577 Query 155955 T 155955 | Sbjct 12116578 T 12116578 >seq11 Length=27185770 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 155884 AACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTT 155943 ||||| ||| |||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 25910910 AACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTA 25910851 Query 155944 GACCTTGCTGCT 155955 ||||| |||||| Sbjct 25910850 GACCTAGCTGCT 25910839 >seq5 Length=38039368 Score = 93.3 bits (102), Expect = 5e-14 Identities = 119/160 (74%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 155776 ACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCT 155835 |||||| | ||| | || ||||| ||||| || ||||| ||||| |||||||| ||| Sbjct 16640587 ACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAACGGGTTCAATTTCAACCA-TCT 16640529 Query 155836 GTAGTAGAC-GCTAGTGGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGG 155894 ||||| || || | ||| || || ||| ||||| || || | ||||| || Sbjct 16640528 GTAGTTGATAGCCAA-GGTCGCGTTATTTATACTTGGGCTGATATCATCAACCGTGCAAA 16640470 Query 155895 TCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAAC 155934 ||||| |||||||||||||||||| ||||| |||||| || Sbjct 16640469 TCTTGCTATGGAAGTAATGCACGAACGTAATGCTCACCAC 16640430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584835112274720