Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq4 196 1e-45 seq11 84.2 6e-12 seq5 84.2 6e-12 >seq4 Length=26741765 Score = 196 bits (216), Expect = 1e-45 Identities = 265/364 (73%), Gaps = 4/364 (1%) Strand=Plus/Minus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| ||||||||| ||||||||||| ||||| |||||||||||||||||||| || Sbjct 12116578 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 12116519 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCG-TCTACTA 40647 | | | ||| | | ||||||||||||| ||| || ||| || || || |||| Sbjct 12116518 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACC-TTGGCTATCAACTA 12116460 Query 40648 CTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGG 40707 | || ||||| || || || || || || || |||||||||||| ||||| | | | Sbjct 12116459 CAGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAG 12116400 Query 40708 TAAGCCATATGCCAATAACCGGGAAAGCA-CCAAGAAAGAAGTGTAGCGCACGGCTATTG 40766 | | ||| || || | || || ||||| ||||||| |||||||| | ||| ||| Sbjct 12116399 TGAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAA-GAAGTGTAAAGAACGAGAGTTG 12116341 Query 40767 TTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTA 40826 || || ||||||||| || |||| || ||||| ||||| || || || || || ||| Sbjct 12116340 TTAAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTA 12116281 Query 40827 TAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTC 40886 |||||||| | || |||||||| | || || | || ||||| |||| ||||| Sbjct 12116280 TAAGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTT 12116221 Query 40887 TCCC 40890 |||| Sbjct 12116220 TCCC 12116217 Score = 179 bits (198), Expect = 1e-40 Identities = 287/405 (71%), Gaps = 8/405 (2%) Strand=Plus/Plus Query 40775 AGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTC 40834 ||||||||| || |||| || ||||| ||||| || || || || || ||||||||||| Sbjct 188484 AGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTCTC 188543 Query 40835 GCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCC-GAA 40893 | || |||||||| | || || | || ||||| |||| ||||| |||| ||| Sbjct 188544 TTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCTGAA 188603 Query 40894 TGA--TTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCA-AACAAAGCACCACCAAAGA 40950 | | |||| || ||| | || ||||||||| || | | ||| | || | Sbjct 188604 CAAACTAGAGGT--TACCAAAGAA-CCATGCATAGCACTTGAATAGGGAACCGCATAATA 188660 Query 40951 CGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGA 41010 | || || || || | ||| || ||||| ||||| || ||||| || ||||| ||||| | Sbjct 188661 CACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATA 188720 Query 41011 CAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCT 41070 ||| ||| |||||||| || | | ||||||||||||||||||||||||||| || | Sbjct 188721 CAATCATAAAGTTGAAAGTACAAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTT 188780 Query 41071 GACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCA 41130 |||| | || |||| ||||| ||||| ||| |||| | ||||||| ||||| | Sbjct 188781 GACCAATAGGGTAAATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAA 188840 Query 41131 CAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACT 41175 || ||||| || | ||||| || || | |||||||||| Sbjct 188841 CAGTAATCCAAGGACGTATACCCAG-ATGGAACTCAGTTCCCACT 188884 >seq11 Length=27185770 Score = 84.2 bits (92), Expect = 6e-12 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| ||||||||| ||||||||||| ||||| |||||||||||||||||||| || Sbjct 25910839 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 25910898 Query 40589 A 40589 | Sbjct 25910899 A 25910899 >seq5 Length=38039368 Score = 84.2 bits (92), Expect = 6e-12 Identities = 106/142 (75%), Gaps = 3/142 (2%) Strand=Plus/Plus Query 40550 GTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGACTCTGTCTGTTAAGAACATC 40609 || |||||| ||||| |||||||||||||||||| | ||| | | ||| | | ||| Sbjct 16640430 GTGGTGAGCATTACGTTCGTGCATTACTTCCATAGCAAGATTTGCACGGTTGATGATATC 16640489 Query 40610 AGCCCAAGTAGGAATGACTTTACCATTAGC-GTCTACTACTGACTGGTTAAAGTTAAAAC 40668 |||||||||| ||| || ||| || || || ||||| || ||||| || || || | Sbjct 16640490 AGCCCAAGTATAAATAACGCGACC-TTGGCTATCAACTACAGA-TGGTTGAAATTGAACC 16640547 Query 40669 CATTGAGGTTAAAAGCCATAGT 40690 | || || || ||||||||||| Sbjct 16640548 CGTTTAGATTGAAAGCCATAGT 16640569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143702379522408