Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq4 269 3e-67 seq5 98.7 1e-15 seq11 82.4 9e-11 >seq4 Length=26741765 Score = 269 bits (298), Expect = 3e-67 Identities = 302/401 (75%), Gaps = 2/401 (0%) Strand=Plus/Plus Query 67605 GCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCT 67664 ||||| |||||||| || || || || || |||||||| || ||||| || ||||||||| Sbjct 188485 GCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTCTCT 188544 Query 67665 TCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATA 67724 || ||||| || || ||||||| | || || || | ||||| ||||| |||| Sbjct 188545 TCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCTGAAC 188604 Query 67725 AGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTA-AAGAGTGAACCACCGAATACACC 67783 | | ||| || || | |||||| ||||||||||| || || ||||| | |||||||| Sbjct 188605 AAACTAGAGGTTACCAAAGAACCATGCATAGCACTTGAATAGGGAACCGCATAATACACC 188664 Query 67784 TGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAA 67843 ||||| || | ||| || ||||| |||||||||||||| |||||||| ||||| || | Sbjct 188665 AGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATACAAT 188724 Query 67844 CATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACC 67903 ||| |||| ||||||| ||| || || | |||||| | ||||||||| |||||||| Sbjct 188725 CATAAAGTTGAAAGTACAAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACC 188784 Query 67904 GAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTACACA 67963 | ||| || | |||||| |||||| || || | || ||||| || ||||| ||| Sbjct 188785 AATAGGGTAAATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGT 188844 Query 67964 GATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACT 68004 ||||||||||| ||||| ||| || || |||||||||| Sbjct 188845 AATCCAAGGACGTATACCCAGATGG-AACTCAGTTCCCACT 188884 Score = 233 bits (258), Expect = 2e-56 Identities = 272/366 (74%), Gaps = 6/366 (2%) Strand=Plus/Minus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| ||||| ||||||||||||||||| ||||| |||||||| |||||||| ||||| Sbjct 12116578 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 12116519 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAAC 67474 || | ||| | ||| || ||||||||| ||| || | |||| | ||||| Sbjct 12116518 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACG---CGACCTTGGCTATCAAC 12116462 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534 || ||||||||||| ||||| ||||| || ||||| |||||||| | ||| | || Sbjct 12116461 TACAGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGC 12116402 Query 67535 AGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTT 67594 ||||||||| || | || ||||| | ||||| | ||||||||| | | | ||||| Sbjct 12116401 AGTGAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTT 12116342 Query 67595 GTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTT 67654 ||| ||| ||||| |||||||| || || || || || |||||||| || ||||| || Sbjct 12116341 GTTAAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATT 12116282 Query 67655 GTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGT 67714 ||||||||||| ||||| || || ||||||| | || || || | ||||| || Sbjct 12116281 ATAAGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGT 12116222 Query 67715 TTCTCT 67720 ||| || Sbjct 12116221 TTCCCT 12116216 >seq5 Length=38039368 Score = 98.7 bits (108), Expect = 1e-15 Identities = 124/168 (74%), Gaps = 7/168 (4%) Strand=Plus/Plus Query 67379 GTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAGTCCTGCTCTGTTAAGGATGTC 67438 || |||||| ||||| |||||||| |||||||| |||| ||| | ||| | ||| || Sbjct 16640430 GTGGTGAGCATTACGTTCGTGCATTACTTCCATAGCAAGATTTGCACGGTTGATGATATC 16640489 Query 67439 TGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAACGACGGATTGGTTGAAGTTGAA 67495 ||||||||| ||| || | |||| | ||||| || ||| ||||||| ||||| Sbjct 16640490 AGCCCAAGTATAAATAACG---CGACCTTGGCTATCAACTACAGAT-GGTTGAAATTGAA 16640545 Query 67496 ACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCA 67543 ||||| || ||||| |||||||| | ||| | ||||||||||| Sbjct 16640546 CCCGTTTAGATTGAAAGCCATAGTCCTAATACCTAAAGCAGTGAACCA 16640593 >seq11 Length=27185770 Score = 82.4 bits (90), Expect = 9e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| ||||| ||||||||||||||||| ||||| |||||||| |||||||| ||||| Sbjct 25910839 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 25910898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566947114957920