Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq4 257 2e-63 seq5 87.8 2e-12 >seq4 Length=26741765 Score = 257 bits (284), Expect = 2e-63 Identities = 287/382 (75%), Gaps = 1/382 (0%) Strand=Plus/Plus Query 68086 GCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTAAGTCTCT 68145 ||||| |||||||| | || || || || ||||| || || ||||| || ||||||||| Sbjct 188485 GCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTCTCT 188544 Query 68146 TCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTCACGAACC 68205 || |||||||| || ||||||| | || || || ||||||||||||| | | | Sbjct 188545 TCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCTGAAC 188604 Query 68206 AGTGAAGAAGTAACCAGGGAACCATGCATTGCACT-GAACAGAGATCCACCAAATACGCC 68264 | ||| || |||| ||||||||||| ||||| ||| || || || | ||||| || Sbjct 188605 AAACTAGAGGTTACCAAAGAACCATGCATAGCACTTGAATAGGGAACCGCATAATACACC 188664 Query 68265 AGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACCAG 68324 ||| || || | ||| || || || ||||| |||||||| |||||||| ||||| || | Sbjct 188665 AGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATACAAT 188724 Query 68325 CATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTGACC 68384 ||| |||||||||||| ||| || || | |||||| | |||||||| |||||||| Sbjct 188725 CATAAAGTTGAAAGTACAAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACC 188784 Query 68385 GAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCAACACA 68444 | ||| || | || ||| || |||| || ||||||||||| || || ||||||||| Sbjct 188785 AATAGGGTAAATCAAGAAAACAGCGGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGT 188844 Query 68445 GATCCAAGGACGCATACCAAGA 68466 ||||||||||| ||||| ||| Sbjct 188845 AATCCAAGGACGTATACCCAGA 188866 Score = 253 bits (280), Expect = 2e-62 Identities = 272/360 (76%), Gaps = 0/360 (0%) Strand=Plus/Minus Query 67839 AGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAA 67898 |||||| ||||| |||||||||||||| || ||||| || ||||| ||||||||||| | Sbjct 12116578 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACTTCCATACCAAG 12116519 Query 67899 ACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGAT 67958 | ||| ||||||| | || ||||| ||| | ||| ||| ||||||| | Sbjct 12116518 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTAC 12116459 Query 67959 AGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGT 68018 ||| |||||||| ||||| || || || ||||| ||||| || |||| ||| | ||||| Sbjct 12116458 AGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGT 12116399 Query 68019 GAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTT 68078 |||||| || || || |||||||| ||||| | ||||||||| | ||||| |||||||| Sbjct 12116398 GAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 12116339 Query 68079 GAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTA 68138 || ||||| |||||||| | || || || || ||||| || || ||||| || || Sbjct 12116338 AAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATA 12116279 Query 68139 AGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTC 68198 ||||||||| |||||||| || ||||||| | || || || ||||||||||||| Sbjct 12116278 AGTCTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTC 12116219 >seq5 Length=38039368 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/165 (72%), Gaps = 1/165 (1%) Strand=Plus/Plus Query 67860 GTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAAACCAGCGCGGTTGAGAACGTC 67919 || ||| || ||||| || ||||| ||||||||| | | | || ||||||| | || Sbjct 16640430 GTGGTGAGCATTACGTTCGTGCATTACTTCCATAGCAAGATTTGCACGGTTGATGATATC 16640489 Query 67920 TGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGATAGACTGGTTGAAGTTGAAACC 67979 ||||| ||| | ||| ||| ||||||| | ||| |||||||| ||||| || Sbjct 16640490 AGCCCAAGTATAAATAACGCGACCTTGGCTATCAACTACAGA-TGGTTGAAATTGAACCC 16640548 Query 67980 ATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGTGAACCA 68024 || || ||||| ||||| || |||| ||| | ||||||||||| Sbjct 16640549 GTTTAGATTGAAAGCCATAGTCCTAATACCTAAAGCAGTGAACCA 16640593 Score = 82.4 bits (90), Expect = 9e-11 Identities = 68/82 (83%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || ||||||| |||||||| ||||||||||||| || |||||| ||| || Sbjct 822069 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTACGACCAGTCAGTTAACAACCGACCGC 822126 Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582 ||| || ||||||||||||||| Sbjct 822127 TCTACCACTGAGCTACTGAGGA 822148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572054314191840