Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq11 138 3e-27 seq8 132 1e-25 seq9 105 2e-17 seq7 93.3 1e-13 seq6 91.5 4e-13 seq1 89.7 2e-12 >seq11 Length=27185770 Score = 138 bits (152), Expect = 3e-27 Identities = 238/342 (70%), Gaps = 4/342 (1%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 ||||||||| || |||||| | ||| || ||||||||| ||| | | || || Sbjct 2753534 ATTTCTTACCGTACCATCATATTTCACCATGATATCTTCCATAGCCTTCACAAGTCGTCG 2753593 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||| ||||| ||||| ||| || || ||||| |||||||| ||||| | | |||||| Sbjct 2753594 CTGGATATATCCAGTCTCAGAGGTCTTCACAGCAGTATCAATCAGACCTTCTCTACCACC 2753653 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||| ||||| | |||| ||| || || | || | ||| |||| || || Sbjct 2753654 CATAGCATGAAAGAAAAATTCTTGTGGTGTCAGACCTCTAAGGTAAGAGTTCTCCACAAA 2753713 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTC--TCA 302775 ||||| || || || || || || ||||| |||| || | | || | | Sbjct 2753714 CCCACGACTTTCAGGACCATAATCATCTTTTGTGAAGTGGGGCAACGTTC-GATCGATGA 2753772 Query 302776 TAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGC 302835 |||| ||||||| ||||| || ||||| ||||||||||| | || | | |||| || Sbjct 2753773 -AGCCAAATGGGATCCGCTTGCCCTCAACATTCTGCTGTCCGACACAAGCAGTCATTTGA 2753831 Query 302836 GAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 |||||||| | ||| || || ||||| ||| | |||||| Sbjct 2753832 GAAATATTGATGAAACTTCCTTTTGAGCCTGCAGTAACCATA 2753873 >seq8 Length=30429317 Score = 132 bits (146), Expect = 1e-25 Identities = 213/306 (70%), Gaps = 0/306 (0%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || || |||||| | ||| || ||||||||| ||| | | || || Sbjct 2910117 ATTTCTAACAGTACCATCATACTTCACCATGATATCTTCCATAGCCTTCACAAGTCGTCG 2910176 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||| ||||| |||||| || || || ||||| |||||||| ||||| | | |||||| Sbjct 2910177 CTGGATATATCCAGTTTCCGAGGTCTTCACAGCAGTATCAATCAGACCTTCTCTACCACC 2910236 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||| ||||| | |||| ||| || || | || | ||| |||| || || Sbjct 2910237 CATAGCATGAAAGAAAAATTCTTGTGGTGTCAGGCCTCGAAGGTAAGAGTTCTCCACAAA 2910296 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATA 302777 ||||| || || || ||| || || ||||| |||| || | || | Sbjct 2910297 CCCACGACTTTCAGGACCATAGTCATTTTTCGTGAAGTGGGGCAATGTTCGATTGGTGAA 2910356 Query 302778 GCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGA 302837 ||| ||||||| ||||| || ||||| ||||||||||| | || | | ||||||| || Sbjct 2910357 GCCAAATGGGATCCGCTTGCCCTCAACATTCTGCTGTCCGACACAAGCAGTCATCTGTGA 2910416 Query 302838 AATATT 302843 |||||| Sbjct 2910417 AATATT 2910422 >seq9 Length=31548187 Score = 105 bits (116), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 5/231 (2%) Strand=Plus/Plus Query 156038 CATAGCAAAACTACCATTCCTCTTGCC---ACCCTGATCTACATACCGAGCAGTCTTATT 156094 ||||| || ||||| || |||||||| ||| ||||| ||||| || ||||| | ||| Sbjct 3307322 CATAG--AACCTACCCTTTCTCTTGCCTCCACCTTGATCAACATAACGGGCAGTATCATT 3307379 Query 156095 GAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGA 156154 ||| |||| ||||||||||| ||| |||||||| || ||||| ||||| || |||| Sbjct 3307380 GAAAACACGTAGCATAGGAACAATCCCATTGGAGGTTCCATTTGTTCCACGGATATAGCT 3307439 Query 156155 ACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTG 156214 |||| | |||| ||| |||| | ||||| || || | |||| || Sbjct 3307440 CCCAGTAGCTCGAATATTGTGAACTGAGACACCAATTCCTCCAGCAGATTTGCTTATGAC 3307499 Query 156215 AGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 ||| |||||||| | ||||| | || || ||||| ||||||| ||| Sbjct 3307500 AGCACATTCCTTCAAAGTATCATAGATTCCCTCAATGCTGTCATCTTTCAT 3307550 Score = 96.9 bits (106), Expect = 1e-14 Identities = 316/473 (67%), Gaps = 20/473 (4%) Strand=Plus/Plus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCG---GTTTGCTT-AAATCC 288944 ||||| || ||||| || || || |||| ||||| ||||| ||| | | ||| || Sbjct 28185843 ATATCAGCCCTGTTGGTGGCAGC-AATA--ACAAT-GATTCCAGTGTTCCCCTCAAAACC 28185898 Query 288945 ATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGA 289004 |||||| || | | ||||| | || || ||||||||||||||| ||| | | Sbjct 28185899 ATCCATCTCAGTCAGCAACTGATTCAAAGTCTGCTCCCTTTCATCATTTCCACCACC--A 28185956 Query 289005 ATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACA 289064 || ||| | || ||| ||| | ||||||||||||||||| |||| || | | || Sbjct 28185957 AT-ACCTG--TCCCTC-TTTGCCTCCCAACAGCATCAATTTCATCAACAAATACTATGCA 28186012 Query 289065 CGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAAC 289124 |||| ||| | | || | || | || | || ||||| || |||| || || Sbjct 28186013 AGGAGCATTCTCCTTTGCCTTCTTGAAGAGATCACGAACCCGGGAGGCACCAACTCCGAC 28186072 Query 289125 ATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTG 289183 | |||| || ||||| ||||| | |||| | || | || | ||| ||||| |||| Sbjct 28186073 AAACATCTCCACAAACTCAGATCCTGATA-TCGAGAAAAACGGCACACCAGCTTCCCCTG 28186131 Query 289184 CTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCT 289243 | | ||| | || || | |||||||| |||||||| || || | | ||||| |||| Sbjct 28186132 CAATAGCCTTGGCAAGCAAAGTCTTACCAGTTCCAGGAGGACCAACAAGCAGAACACCCT 28186191 Query 289244 TTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTT 289303 | || | || ||| ||| | | | || || |||| || || || || | || Sbjct 28186192 TAGGGATGCGAGCACCAACAGCGGTGAACCTTTCTGGTTTCTTCAAGAACTCAACCACTT 28186251 Query 289304 CC-TCAAGTTCATATTTTGCCTCATC-ACATCCTGCTACATCAGCAAAAGTAA 289354 || | ||| || | ||||| ||||| ||| || || |||||| |||| |||| Sbjct 28186252 CCATGAAG-TCTTGCTTTGCTTCATCGACA-CCAGCAACATCATCAAATGTAA 28186302 >seq7 Length=32884216 Score = 93.3 bits (102), Expect = 1e-13 Identities = 165/235 (70%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC--AATT 289086 ||| |||||||||| ||| ||||||||||| | | | || | | || | | || || Sbjct 20713958 ACCCACAGCATCAAGTTCATCAATGAAAATTATAGATGGGGCAGCTTCTTTGGCCTCCTT 20714017 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 | ||||| || |||||||||| |||||| ||||| | | ||| ||||||||| | Sbjct 20714018 G--AATAAATCCCTTACACGGGCTGCTCCTCTTCCAACGAAAACTTCAACAAATTCACTA 20714075 Query 289147 GCGGATACTTGAATGAATGTTACATT--TGCTTCGCCTGCTACTGCCCTCGCCAGAAGTG 289204 || || || || || | | ||| || || ||||| |||||||| |||||||| | Sbjct 20714076 GCAGAAAC-AGAGAAAAAGGGA-ATTCCAGCCTCTCCTGCAACTGCCCTTGCCAGAAGAG 20714133 Query 289205 TCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCC 289259 | || || ||||| || || || | | ||||| ||| | |||| ||| || || Sbjct 20714134 TTTTCCCAGTTCCTGGAGGCCCAACAAGCAGAACACCCCTGGGTAATTTAGCTCC 20714188 >seq6 Length=37594838 Score = 91.5 bits (100), Expect = 4e-13 Identities = 206/303 (68%), Gaps = 14/303 (5%) Strand=Plus/Minus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 || ||||| |||||||| | || |||||||| ||||| |||||| ||| ||| | Sbjct 26776302 GCAATAAGCCCACACTTCTCGCATACATGGACTCTGTACGCATCACTCTGATCAAATAAC 26776243 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCG---TGTGAAATCATACAATCACGCTCCATTTCA 251520 | |||| ||| | ||||| || || | ||||||||| || | |||||| || Sbjct 26776242 CTTTCCTTAAGGAA---AAATGCAGCGCCATGAGCAATCATACAGTCCCTCTCCATCTCT 26776186 Query 251521 CCGAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACC 251580 || || || |||||||||||||| | | ||||| ||||| || | || || | | Sbjct 26776185 CCAAACCGGAGACCACCATCGCGTGAGCGCCCCTCTGCAGGTTGTCTGGTAAGTATCTGC 26776126 Query 251581 ATAGGACCGATGGAGCGGCTA---TGTTGCTTATCATTTACCATATGCTTGAGACGCTGG 251637 | |||||| | | || ||| || ||| |||| ||||| ||||| || | |||| Sbjct 26776125 ACAGGACC-ACG--GCCTCTAGAGTGAATCTTGTCATCCACCATGTGCTTAAGTCTCTGG 26776069 Query 251638 TAGAATGCGGGACCGATGAAGATGCTCGAAG-GCATTTGCTCTCCAGTTAGAGCGTTATA 251696 || | | ||||| | ||| || | | || |||| || |||||| || |||| || Sbjct 26776068 TAATAAGTAGGACCAAGGAAAATCATGGCAGTTAATTTTCT-TCCAGTGTGACCGTTGTA 26776010 Query 251697 CAT 251699 ||| Sbjct 26776009 CAT 26776007 >seq1 Length=46529941 Score = 89.7 bits (98), Expect = 2e-12 Identities = 210/311 (68%), Gaps = 6/311 (2%) Strand=Plus/Plus Query 289036 GCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAAT 289095 ||||||||||| |||||||| | | || || ||| || | || | |||||| Sbjct 38829575 GCATCAATTTCATCAATGAATACAATACTAGGTGAACACTGCCGAGCTTCTTGAAATAAG 38829634 Query 289096 TCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACT 289155 | | || | ||||| ||||| ||||||| ||||||| | || || ||| | || | | Sbjct 38829635 TTCCGCACCCTGGATGGTCCAACACCAACAAACATTTCCATGAAGTCTGAACCAGA-AAT 38829693 Query 289156 TGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGT 289214 || | ||| | ||| | || ||||| || | || || || ||||| ||||| Sbjct 38829694 AGACAAGAAGGGCACACCAGACTCTCCTGCAGTAGCTTTAGCAAGGAGAGTCTTTCCTGT 38829753 Query 289215 TCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACTT-ATAT 289272 || || || || | | ||| | |||||||||| |||||| ||||| ||| |||| Sbjct 38829754 GCCTGGGGGACCAACAAGAAGAGCACCCTTTGGTATTTTTGCTCCCAG--TTCTTCATAT 38829811 Query 289273 TTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACAT 289332 |||| || | || | || | |||| |||| || || | ||| || |||||||| Sbjct 38829812 TTCTTGGGATTTTTCAGGAAATGAACAAATTCCATAATTTATTGTTTGGCTTCATCACAG 38829871 Query 289333 CCTGCTACATC 289343 || |||||||| Sbjct 38829872 CCAGCTACATC 38829882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817373708044