Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq4 253 2e-62 seq5 96.9 4e-15 seq11 95.1 1e-14 >seq4 Length=26741765 Score = 253 bits (280), Expect = 2e-62 Identities = 272/360 (76%), Gaps = 0/360 (0%) Strand=Plus/Plus Query 151466 GAGACCACCGAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACC 151525 || ||||| |||||||| || || | ||||||| || |||||||| |||||||| Sbjct 12116219 GAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACT 12116278 Query 151526 TACAACATCGTTGCCGCACACGGTTACTTTGGTCGTCTCATCTTCCAATACGCTTCCTTC 151585 || || || || ||||| || ||||| ||||| || | ||||||||||| ||| || Sbjct 12116279 TATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTT 12116338 Query 151586 AACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTC 151645 ||||| || ||||| | ||||||||| | || || |||||||| || || || |||||| Sbjct 12116339 AACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTC 12116398 Query 151646 ACTGCACTTGGTGTCAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCC 151705 ||||| | ||| | || || ||||| ||||| || ||||| ||||| |||||||| || Sbjct 12116399 ACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCT 12116458 Query 151706 ATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGT 151765 | | ||| | || || || | || || ||||| || | | |||||||| | Sbjct 12116459 GTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAAT 12116518 Query 151766 CTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCT 151825 || ||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||||| Sbjct 12116519 CTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 12116578 Score = 248 bits (274), Expect = 1e-60 Identities = 301/405 (74%), Gaps = 4/405 (1%) Strand=Plus/Minus Query 151177 TGAGTGGGAACTGTCTTACCGCTTGGGTATGCGTCCCTGGATCTGCGTTGCATACTCTGC 151236 ||||||||||||| || | || |||||| ||||| ||||| |||||||| || || Sbjct 188886 TGAGTGGGAACTGAGTTCCATCT-GGGTATACGTCCTTGGATTACTGTTGCATATTCAGC 188828 Query 151237 TCCAGTTGCTGCTGCGAGTGCAGTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTC 151296 ||| ||||| ||||| | || || ||| | | || ||| | |||||||| |||||| Sbjct 188827 TCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTC 188768 Query 151297 TGATGCAATGCCCCTGGGTATTTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGA 151356 ||||| ||||| | || || ||| | || ||||||| ||| |||| ||||| ||||| Sbjct 188767 TGATGGTATGCCTTTAGGAATATCTTGTACTTTCAACTTTATGATTGTATTCCAGGCAGA 188708 Query 151357 GCACAACATTCTGATGCACCCCTTCCATATGCTTGGTGTGGCTGGTGTCTTCGGTGGATC 151416 ||| ||||| || ||||| || || || ||| | ||||| |||||||| || | || || Sbjct 188707 GCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTATGCGGTTC 188648 Query 151417 GCTCTTCTCG-GCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTC-GTGAGACCACC 151474 || ||| | || ||||| |||||| |||| || || | | | |||| | || ||||| Sbjct 188647 CCTATTCAAGTGCTATGCATGGTTCTTTGGTAACCTC-TAGTTTGTTCAGGGAAACCACT 188589 Query 151475 GAAAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATC 151534 |||||||| || || | ||||||| || |||||||| |||||||| || || || Sbjct 188588 GAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATT 188529 Query 151535 GTTGCCGCACACGGTTACTTTGGTCGTCTCATCTTCCAATACGCT 151579 || ||||| || ||||| ||||| || | ||||||||||| ||| Sbjct 188528 GTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCT 188484 >seq5 Length=38039368 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/165 (73%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 151640 TGGTTCACTGCACTTGGTGTCAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAAC 151699 ||||||||||| | ||| | || || ||||| ||||| || ||||| ||||| |||||| Sbjct 16640593 TGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAACGGGTTCAATTTCAAC 16640534 Query 151700 CAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTGAACCGT 151759 || || | | ||| | || || || | | || ||||| || | | |||||| Sbjct 16640533 CA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTTATACTTGGGCTGATATCATCAACCGT 16640475 Query 151760 GCAGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAAC 151804 ||| ||| | ||||||||| |||||||| |||||||||||| || Sbjct 16640474 GCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCACCAC 16640430 >seq11 Length=27185770 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 151754 AACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCTCTC 151813 |||||||| ||| ||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 25910910 AACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTA 25910851 Query 151814 GACCTTGCTGCT 151825 ||||| |||||| Sbjct 25910850 GACCTAGCTGCT 25910839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549622317556640