Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq4 215 6e-51 seq1 104 3e-17 >seq4 Length=26741765 Score = 215 bits (238), Expect = 6e-51 Identities = 240/318 (75%), Gaps = 2/318 (1%) Strand=Plus/Plus Query 72901 TTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTA 72960 || || ||||| ||||| || ||||| ||||| || |||||||| || || || ||||| Sbjct 12116258 TTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTA 12116317 Query 72961 ATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTC 73020 |||||||| ||||| || |||||||||||||| |||||||||||| | |||| | Sbjct 12116318 ATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGG 12116377 Query 73021 CCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAACCTTAAC 73080 |||||||| | | ||||| || | | ||||| |||| ||||| ||||| || ||| Sbjct 12116378 CCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAAC 12116437 Query 73081 GGATTCAACTTCAACCAATCAGTTGTAGAT-GCAAACGGAAAGATTGTACCAACATGGGG 73139 |||||||| ||||||||||| || || ||| || || || || | || |||| Sbjct 12116438 GGATTCAATTTCAACCAATCTGTAGTTGATAGCCAA-GGTCGCGTTATTAATACTTGGGC 12116496 Query 73140 AGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAA 73199 ||| | | ||| | || || ||||| |||||||| ||||| ||| | ||||| ||||| Sbjct 12116497 TGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAA 12116556 Query 73200 CTTCCCACTAGACCTAGC 73217 |||||| ||||||||||| Sbjct 12116557 CTTCCCTCTAGACCTAGC 12116574 Score = 179 bits (198), Expect = 4e-40 Identities = 262/369 (71%), Gaps = 1/369 (0%) Strand=Plus/Minus Query 72607 CCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTG 72666 |||||||| ||| ||||| ||||| ||||| | || || || || ||| | | Sbjct 188853 CCTTGGATTACTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATT 188794 Query 72667 TATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTC 72726 || || | ||||| || ||||||||||||||||| |||| || || |||| ||| Sbjct 188793 TACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTTGTACTTTC 188734 Query 72727 AACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCA 72786 ||||| ||| | || ||||| ||||| || ||||| || ||||| || || || ||| | Sbjct 188733 AACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTA 188674 Query 72787 GGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTC-AGTGCAATGCACGGTTCACTTGTTAC 72845 |||||||| ||| | || | ||| || ||| ||||| ||||| ||||| | || || Sbjct 188673 GGTGTAGCTGGTGTATTATGCGGTTCCCTATTCAAGTGCTATGCATGGTTCTTTGGTAAC 188614 Query 72846 TTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGG 72905 || | | |||| || || || || ||||| | || | || || | || || Sbjct 188613 CTCTAGTTTGTTCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGG 188554 Query 72906 ACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTT 72965 ||||| ||||| || ||||| ||||| || |||||||| || || || |||||||||| Sbjct 188553 TCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTT 188494 Query 72966 CCAGTATGC 72974 ||| ||||| Sbjct 188493 CCAATATGC 188485 >seq1 Length=46529941 Score = 104 bits (114), Expect = 3e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 73364 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 73423 ||||| || | || || |||||| || || ||||| || || | ||||||||||| Sbjct 26428812 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGC 26428753 Query 73424 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 73483 || || ||||| ||||||||||| | || | ||||||||||| ||| || ||||| Sbjct 26428752 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 26428693 Query 73484 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTTTTA 73543 || || || ||||| || ||||| | || || ||| | || || ||||| ||| Sbjct 26428692 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAATTTCTTA 26428633 Query 73544 ACTGCAGCAGTATCA 73558 || |||||||| ||| Sbjct 26428632 ACCGCAGCAGTTTCA 26428618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572873514068960