Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq8 111 1e-19 seq9 82.4 6e-11 >seq8 Length=30429317 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| |||||||| || || |||||||||||||||||| | || ||| | Sbjct 9003134 AATGCAAATCTTTGTCAAGACATTGACCGGCAAAACCATTACCCTGGAGGTTGAGTCGTC 9003075 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | | |||||| |||||| ||||| || || | ||| |||||| Sbjct 9003074 AGACACAATTGACAACGTAAAAGCAAAGATTCAGGACAAGGAGAGCATTCCCCCGGATCA 9003015 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || | || || | ||| || || ||||| ||||||| | | || | || |||||||| Sbjct 9003014 GCAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCTTAGCAGATTACAA 9002955 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||| || || || || || |||||| ||||| Sbjct 9002954 CATCCAGAAGGAGTCCACCTTGCACCTGGTG 9002924 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTG 110330 |||||| || || ||||| ||| | || ||||| || |||||| | || ||| || Sbjct 25235096 AATGCAGATTTTCGTCAAGACTCTCACTGGCAAGACAATTACCCTGGAGGTTGAGAGCTC 25235155 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 | || || ||| | | || || |||||| || || || ||| | ||| ||| | Sbjct 25235156 A-GACACCATCGACAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCCCCGGACC 25235214 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | || ||||| || | || ||||| ||||||||||||| | | || | || || |||| Sbjct 25235215 AGCAGAGACTCATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTTGCCGACTACA 25235274 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||||| || || ||||| | ||| ||||| Sbjct 25235275 ACATTCAGAAGGAGTCTACCCTACACTTGGTG 25235306 >seq9 Length=31548187 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || || || | || ||||| ||||||||| | || ||| | | Sbjct 28897758 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATTACCCTTGAGGTTGAGTCGTCC 28897817 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | | || || |||||| ||||| || ||| | ||| ||| || Sbjct 28897818 GACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 28897877 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| ||||| ||||| ||||||| | | || | |||||||||||| Sbjct 28897878 CAGCGTCTGATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACCCTTGCGGATTACAAC 28897937 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || || || || || | ||| ||||| Sbjct 28897938 ATCCAGAAGGAGTCCACACTCCACCTGGTG 28897967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412841539621916