Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq8 111 1e-19 >seq8 Length=30429317 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 ||||||||| |||||||| || || || ||||||||||||||| | || ||| | Sbjct 9003134 AATGCAAATCTTTGTCAAGACATTGACCGGCAAAACCATTACCCTGGAGGTTGAGTCGTC 9003075 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | |||||| ||||||| || || || || | ||| |||||| Sbjct 9003074 AGACACAATTGACAACGTAAAAGCAAAGATTCAGGACAAGGAGAGCATTCCCCCGGATCA 9003015 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | ||| || || ||||| ||||| | | || | || || ||||| Sbjct 9003014 GCAGCGCCTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCTTAGCAGATTACAA 9002955 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || |||||||| || |||||| ||||| Sbjct 9002954 CATCCAGAAGGAGTCCACCTTGCACCTGGTG 9002924 Score = 105 bits (116), Expect = 5e-18 Identities = 152/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 |||||| ||||| ||||| ||| | || ||||| || |||||| | || ||| ||| Sbjct 25235096 AATGCAGATTTTCGTCAAGACTCTCACTGGCAAGACAATTACCCTGGAGGTTGAGAGCTC 25235155 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 || || ||| | | || || ||||| ||||| || ||| | ||| ||| | Sbjct 25235156 A-GACACCATCGACAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCCCCGGACC 25235214 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 |||||||||| || | || ||||| ||||||||||| | | || | || ||||||| Sbjct 25235215 AGCAGAGACTCATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTTGCCGACTACA 25235274 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||||| ||||||||||| | ||| ||||| Sbjct 25235275 ACATTCAGAAGGAGTCTACCCTACACTTGGTG 25235306 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||||||||| || | || || || |||||||| | || ||| || Sbjct 9003361 ATGCAGATTTTTGTCAAGACCCTGACCGGAAAGACCATTACGCTTGAGGTCGAGTCTTCT 9003302 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | | || || |||||| || || || ||| | ||| ||| ||| Sbjct 9003301 GATACAATCGACAATGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAG 9003242 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||| ||||||| || |||| |||||||| Sbjct 9003241 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGACGCACCCTGGCTGACTACAAT 9003182 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || ||||||||||| | ||| | ||| Sbjct 9003181 ATCCAGAAGGAGTCTACCCTTCACCTAGTG 9003152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398876741664268