Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq8 134 1e-26 seq9 100 2e-16 seq7 95.1 9e-15 >seq8 Length=30429317 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||||| | ||||| | ||||| ||||| ||||| |||||||| ||||| || Sbjct 9003363 CCTCCCCTCAGCCTAAGCACAAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAATCTGCG 9003422 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || || ||||| ||||| ||| | || | | ||||| || || ||| Sbjct 9003423 AGGGTGCGCCCGTCCTCAAGTTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCAGGTGGA 9003482 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||||| ||||| || ||| || | |||||| | || | |||||||| || || Sbjct 9003483 ATACCCTCCTTGTCCTG-AATCTTGGCCTTGACATTGTCAATCGTGTCAGAGGACTCAAC 9003541 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||| || |||||||| | || || ||||| |||||||| Sbjct 9003542 CTCTAGGGTTATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 9003589 Score = 120 bits (132), Expect = 2e-22 Identities = 159/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||||| || | ||||| || || || ||||| ||||| || | |||||| Sbjct 9002918 ACGGAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAATCTGCTAAGGTGCGGCC 9002977 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||| || ||||||||| | |||| | ||||||||||| ||||| | ||| || Sbjct 9002978 ATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCCGGGGGAATGCTCTCCTT 9003037 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || ||| |||| ||| || | || | ||||| || || || || || || | Sbjct 9003038 GTCCTG-AATCTTTGCTTTTACGTTGTCAATTGTGTCTGACGACTCAACCTCCAGGGTAA 9003096 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | |||||||| || || || || ||||| || |||||| Sbjct 9003097 TGGTTTTGCCGGTCAATGTCTTGACAAAGATTTGCATT 9003134 >seq9 Length=31548187 Score = 100 bits (110), Expect = 2e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| ||||| | | ||| |||||||| ||||| || ||||| |||||||| ||||| || Sbjct 26865719 TCCACCCCTGAGCCTCAGGACCAAATGGAGCGTTGACTCTTTCTGAATGTTGTAATCAGC 26865660 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || || ||| || ||||| || || || | |||| |||||||| || || || Sbjct 26865659 TAATGTACGTCCATCTTCCAGTTGCTTCCCTGCGAAAATCAGCCTTTGCTGGTCTGGGGG 26865600 Query 29679 AATACCCTCTTTGTCTTG 29696 ||||||||||||||| || Sbjct 26865599 AATACCCTCTTTGTCCTG 26865582 >seq7 Length=32884216 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||| || | || || ||||| || || || |||||||| || |||| |||||| | Sbjct 29194185 CGCAGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTATAGTCGGCAAGGGTGCGGCCA 29194126 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || ||||| || ||||| || | || | | ||||| || || || || ||||| || Sbjct 29194125 TCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGGATGCCCTCCTTA 29194066 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || || || | || | |||||||| || || || ||||| || Sbjct 29194065 TCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCAGAGGACTCAACCTCCAGAGTGATG 29194006 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| | ||| || || ||||||||||| Sbjct 29194005 GTCTTGCCAGTGAGGGTCTTCACGAATATCTGCAT 29193971 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 ||||| || || || |||||||||||||| | || || ||| || || || |||||| Sbjct 29193438 GTGGACTCCTTCTGGATGTTATAATCCGCGAGAGTACGCCCATCCTCAAGCTGCTTGCCA 29193379 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTT 29708 || | || | | |||||| ||||| || || ||||| ||||| || ||| || | || Sbjct 29193378 GCGAAGATAAGGCGTTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTG-AATCTTAGCCTT 29193320 Query 29709 GACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGT 29768 ||| | || | | || || || || || | || || || |||||||| | ||| Sbjct 29193319 CACATTGTCAATCATATCGGAGGACTCAACCTCCAAGGTGATGGTCTTGCCAGTGAGGGT 29193260 Query 29769 TTTAACAAATATCTGCAT 29786 ||||| ||||||||||| Sbjct 29193259 CTTAACGAATATCTGCAT 29193242 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||| || | || || ||||| || || || ||||| ||||| |||| ||||||| | Sbjct 29193957 CGCAGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCTGCAAGGGTGCGACCA 29193898 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || |||||||| | || | | ||||| || || ||||||||||| ||| Sbjct 29193897 TCCTCAAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCTGGTGGAATACCCTCCTTG 29193838 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGA 29729 || || | || || ||| | || | |||||||| Sbjct 29193837 TCCTGGATCTTGGCCTTCACATTGTCGATCGTGTCAGA 29193800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385219143661692