Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq4 226 3e-54 seq1 114 1e-20 seq5 100 3e-16 >seq4 Length=26741765 Score = 226 bits (250), Expect = 3e-54 Identities = 266/360 (74%), Gaps = 0/360 (0%) Strand=Plus/Plus Query 157678 GAAACAACTGAAACAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACG 157737 ||||| ||||||| || || || | ||||||| || |||||||| |||||||| Sbjct 12116219 GAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACT 12116278 Query 157738 TACAACATCGTTGCTGCACACGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCATTC 157797 || || || || || || || ||||| || || || | ||||||||||| ||| || Sbjct 12116279 TATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTT 12116338 Query 157798 AACAACAGCAGAAGTCTTCACTTCTTCCTCGCCGCATGGCCTGTTGTCGGCATCTGGTTC 157857 |||||| | | | ||||||||| | || || |||||||| || || || |||||| Sbjct 12116339 AACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTC 12116398 Query 157858 ACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCC 157917 ||||| | || | || || ||||| ||||| || ||||| ||||| |||||||| || Sbjct 12116399 ACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCT 12116458 Query 157918 ATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTCCTGAACCGCGCTGGT 157977 | ||||| | || ||||| || | || || ||||| ||| || | ||||| ||| | Sbjct 12116459 GTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAAT 12116518 Query 157978 CTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTGGATCTTGCTGCT 158037 |||||||||||||| ||||| || ||||| || ||||||||||| || || || |||||| Sbjct 12116519 CTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 12116578 Score = 221 bits (244), Expect = 1e-52 Identities = 295/405 (73%), Gaps = 4/405 (1%) Strand=Plus/Minus Query 157389 TGAGTGGGAACTTTCTTACCGTTTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGC 157448 |||||||||||| || || | | ||||| || || ||||| |||||| || || || Sbjct 188886 TGAGTGGGAACTGAGTT-CCATCTGGGTATACGTCCTTGGATTACTGTTGCATATTCAGC 188828 Query 157449 ACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTC 157508 || || || ||||| | || || ||| | | || ||| | |||||||| |||||| Sbjct 188827 TCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTC 188768 Query 157509 CGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGA 157568 |||| ||||||| | || || ||| ||||||| |||| |||| | || ||||||||||| Sbjct 188767 TGATGGTATGCCTTTAGGAATATCTTGTACTTTCAACTTTATGATTGTATTCCAGGCAGA 188708 Query 157569 GCACAATATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATC 157628 ||| || || ||||||||||| || |||||| | || || ||||| ||||| | || || Sbjct 188707 GCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTATGCGGTTC 188648 Query 157629 TTTGTTC-TCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTGTTC-GTGAAACAACT 157686 | ||| ||||||||| || | | || || | || | |||||| | ||||| ||| Sbjct 188647 CCTATTCAAGTGCTATGCATGGTTCTTTGGTAACCT-CTAGTTTGTTCAGGGAAACCACT 188589 Query 157687 GAAACAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACGTACAACATC 157746 |||| || || || | ||||||| || |||||||| |||||||| || || || Sbjct 188588 GAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATT 188529 Query 157747 GTTGCTGCACACGGTTACTTCGGTCGCCTGATCTTCCAATACGCT 157791 || || || || ||||| || || || | ||||||||||| ||| Sbjct 188528 GTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCT 188484 >seq1 Length=46529941 Score = 114 bits (126), Expect = 1e-20 Identities = 145/196 (74%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 158775 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 158834 ||||| || | ||||||||| | | |||| ||||| |||||||| || |||||||| Sbjct 26428812 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGC 26428753 Query 158835 CTTCTTCTTCTACCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTTC 158894 || | ||| | || ||||||| | ||| | || |||||| |||| || || ||||| Sbjct 26428752 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 26428693 Query 158895 GCTACGAGCTGGTATACACATGGACTCGCTACTTCCTATCTTGAGGGT-GCAAACTTTCT 158953 | || |||||||| |||||| | || | ||||||| | || ||| |||| ||||| Sbjct 26428692 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA--TTTCT 26428635 Query 158954 TA-CAGCAGCAGTTTC 158968 || | ||||||||||| Sbjct 26428634 TAACCGCAGCAGTTTC 26428619 >seq5 Length=38039368 Score = 100 bits (110), Expect = 3e-16 Identities = 122/165 (74%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 157852 TGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAAC 157911 ||||||||||| | || | || || ||||| ||||| || ||||| ||||| |||||| Sbjct 16640593 TGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAACGGGTTCAATTTCAAC 16640534 Query 157912 CAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTCCTGAACCGC 157971 || || | ||||| | || ||||| || | | || ||||| ||| || | ||||| Sbjct 16640533 CA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTTATACTTGGGCTGATATCATCAACCGT 16640475 Query 157972 GCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAAC 158016 || ||||| ||||||||| ||||| || ||||| || ||| || Sbjct 16640474 GCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCACCAC 16640430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545273518208960