Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq4 232 8e-56 seq6 87.8 2e-12 >seq4 Length=26741765 Score = 232 bits (256), Expect = 8e-56 Identities = 297/404 (74%), Gaps = 4/404 (1%) Strand=Plus/Minus Query 177896 TGAGTGGGAACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGC 177955 |||||||||||| | || ||| ||||| || || ||||| ||||||||| || || Sbjct 188886 TGAGTGGGAACTGAGTT-CCATCTGGGTATACGTCCTTGGATTACTGTTGCATATTCAGC 188828 Query 177956 ACCTGTTGCAGCAGCATCCGCAGTCTTTCTAG-TCTATCCTTTCGGTCAAGGTTCATTCT 178014 ||||||||||| || |||| || ||||| | | || ||| | |||||||| |||| Sbjct 188827 TCCTGTTGCAGCTGCTACCGCTGT-TTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCT 188769 Query 178015 CCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAG 178074 | |||| ||||||| | || || ||| ||||||| |||| ||| |||||||||| |||| Sbjct 188768 CTGATGGTATGCCTTTAGGAATATCTTGTACTTTCAACTTTATGATTGTATTCCAGGCAG 188709 Query 178075 AACACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGAT 178134 | || || ||||||||||| || || |||||| | ||||| ||||| ||||| | || | Sbjct 188708 AGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTATGCGGTT 188649 Query 178135 CTCTTTTC-TCTGCTATGCATGGAAGTCTCGTTACTTCTTCGCTCGTCCGTGAGACGACA 178193 | || ||| |||||||||||| | | || || ||| | || | || || || Sbjct 188648 CCCTATTCAAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGTTCAGGGAAACCACT 188589 Query 178194 GAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATATAACATC 178253 |||| || || || | ||||||| || || ||||| ||||| || ||||| || Sbjct 188588 GAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATT 188529 Query 178254 GTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGC 178297 || || || |||||||| || || || || |||||||||||||| Sbjct 188528 GTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGC 188485 Score = 205 bits (226), Expect = 1e-47 Identities = 244/330 (74%), Gaps = 1/330 (0%) Strand=Plus/Plus Query 178215 GGTTACAAGTTCGGACAAGAAGAAGAAACATATAACATCGTCGCAGCCCATGGTTACTTC 178274 ||||||| || || ||||| ||||| || ||||| || || || || |||||||| || Sbjct 12116249 GGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTT 12116308 Query 178275 GGTCGTTTGATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTGCACTTCTTCCTC 178334 || || || |||||||||||||| || |||||||| ||||| | ||||||||| | Sbjct 12116309 GGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTG 12116368 Query 178335 GCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTTGGTGTATCCACCATGGCATTT 178394 || || ||||||||||| || || |||||||| || | ||| | || ||||| || Sbjct 12116369 GCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTC 12116428 Query 178395 AACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAAC 178454 || || || |||||||| |||||||| || | | || | ||||| || || | || Sbjct 12116429 AATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAAT 12116488 Query 178455 ACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAAAGAAAT 178514 || ||||| || | |||||||||| ||| || |||||||| ||||||||| | ||| Sbjct 12116489 ACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAAT 12116548 Query 178515 AGCACATAACTTCCCGCTTGATCTTGCAGC 178544 || || |||||||| || || || || || Sbjct 12116549 -GCTCACAACTTCCCTCTAGACCTAGCTGC 12116577 >seq6 Length=37594838 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597 |||||||||||||| || || || || | || ||||||||||| || |||||||| Sbjct 36387313 TACATCCTTGATGCCGCCGAGACCGCTGGAGTGGAGCTTCCCTACTCATGCCGTGCTGGA 36387372 Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657 ||||| ||||||||||| ||||| | | | || | || || ||||| || || Sbjct 36387373 GCATGCTCTACCTGTGCCGGTAAGATCGAGGCTGGCTCCGTCGACCAGTCGGATGGATCA 36387432 Query 138658 TTCCTTGATGATG 138670 ||||||||||||| Sbjct 36387433 TTCCTTGATGATG 36387445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605667109149920