Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq6 237 1e-56 seq4 105 5e-17 seq5 98.7 7e-15 >seq6 Length=37594838 Score = 237 bits (262), Expect = 1e-56 Identities = 704/1076 (65%), Gaps = 20/1076 (2%) Strand=Plus/Minus Query 281411 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 281470 |||| || || |||||| |||||| || ||||| ||||| || | ||||| ||| Sbjct 35689612 GTTGTCTTGTCTTCGGCAGACACATTCAGGATACCGTTGGCGTCAATGTCAAAGCAGACA 35689553 Query 281471 TCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGA 281530 || |||||||| || || | ||||| ||||| || || | |||| | || || Sbjct 35689552 GTGATCTGAGGGACTCCCCTAGGGGCAGGAGGGATTCCAGACAGCTCAAATTTGCCAAGG 35689493 Query 281531 TTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTT 281590 ||| || || | || | | | |||||||| | | || || || ||| Sbjct 35689492 AGATTGTTGTCCCTGGTCCGTGTCCTCTCACCCTCATAGACCTGAATCAACACACCAGGC 35689433 Query 281591 TGATTATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCT 281649 || ||||| || || || | || || ||| || || |||||| || ||||| || Sbjct 35689432 TGGTTATCGGAGTAGGTGGAGAAGAC-CTGCTCCTTCTTGGTAGGAATGGTGGTGTTCCT 35689374 Query 281650 ATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGAC 281709 || | ||||| | ||| || ||||| || | ||||||||| || ||||| || Sbjct 35689373 TGGGATGAGCACTGTCATCACACCTCCCGCTGTCTCGAGACCAAGAGACAGTGGAGTCAC 35689314 Query 281710 ATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTG 281769 ||||| || | || || || | || || | | ||| ||| ||||| || || Sbjct 35689313 ATCAAGGAGAAGAAGATCCTGCACCTTCTCGTTCCCCTCTCCACTAAGGATAGCAGCCTG 35689254 Query 281770 AATAGCAGCACCATATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTA 281827 | |||||||| ||||| |||||||||||||| |||| | || || |||| || Sbjct 35689253 GACGGCAGCACCGTATGCCACAGCTTCATCAGGGTTAATGCTCTTGCAG--AGTTCCTTC 35689196 Query 281828 CCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACT 281887 |||||||| |||| ||||| || ||| |||| || | || ||| || ||||| Sbjct 35689195 CCATTGAAGAAATCCTGCAGAAGCTGCTGAACCCTAGGGATTCTAGTTGAACCACCAACA 35689136 Query 281888 AATACAATTTCATGCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC 281946 | |||| ||||| || ||| | || |||| |||| |||| | || || || Sbjct 35689135 AGGACAACATCATGGACA-GTGCTCTTGTCCATCTTTGCATCCCTCAGGCACTTCTCCAC 35689077 Query 281947 GGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAG 282006 || || | || || || | ||| ||| || || || | ||||| || | Sbjct 35689076 AGGCTCCATACATTTCCTGAAGAGGTCCATGTTAAGCTCCTCAAACCTGGCTCTGGTGAT 35689017 Query 282007 AGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGA 282066 ||| || |||||| || || || | ||||||| |||||| |||||||| | | Sbjct 35689016 GGTGGAATAGAAATCAACACCCTCAAAGAGGGAATCAATTTCAATAGTAGTTTGGGCAGT 35688957 Query 282067 AGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGC 282126 || || || | | || || | |||||||| ||| || || || | || || | | Sbjct 35688956 GGAGGAGAGGGTCCTCTTTGCCCTTTCACATGATGTTCTGAGCCTCCTCAAAGCCCTGG- 35688898 Query 282127 TGATTGATTC--AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACA 282184 | || | | ||| | |||| ||||||||||| |||| ||| | | || Sbjct 35688897 -GGTTCCCGCTGATATCCTTCTTATGCTTTCTCTTGAACTCTTGGACAAAGTGGTTCACC 35688839 Query 282185 AGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGG 282244 || || || ||||| || || || || | | ||| | || | || ||| | || | Sbjct 35688838 AGGCGGTTGTCAAAGTCCTCCCCACCAAGGTGAGTGTCACCAGCTGTTGCTTTCACCTCA 35688779 Query 282245 AAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAA 282304 |||| || || |||| | | || | |||||| || |||||||| | |||||| Sbjct 35688778 AAAATACCCTCCTCAATGGTAAGGAGGGAGACATCAAAAGTACCACCACCAAGGTCAAAA 35688719 Query 282305 ATAAGTACATTCATTTCT-------TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGC 282357 || || || ||| | || | ||| || || ||||||||||| |||| || Sbjct 35688718 ATGAGCACGTTCTTCTCACCAACACTAGTCGCC-TTCTTGTCAAGACCATAAGCAATTGC 35688660 Query 282358 AGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATC 282417 |||||| ||||| ||||| || || | || |||||||||||| ||||| |||||||| Sbjct 35688659 AGCAGCTGTTGGCTCATTGATGATACGCATAACATTAAGACCCGCAATAACACCTGCATC 35688600 Query 282418 TTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 282473 |||||| || || || || ||||| || || |||||||||||||| | ||| |||| Sbjct 35688599 TTTAGTTGCCTGCCTCTGGGAATCATTGAAGTATGCAGGAACAGTGACAACAGCAT 35688544 Score = 129 bits (142), Expect = 4e-24 Identities = 226/328 (69%), Gaps = 6/328 (2%) Strand=Plus/Minus Query 282152 TTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCC 282211 || |||||||| |||| ||| | | || | || || |||||||||||||| || Sbjct 7773090 TTCCTCTTGAATTCTTGCACAAAGTGGTTGACCATGCGGTTGTCAAAATCTTCACCACCA 7773031 Query 282212 AATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGA 282271 | | || | || | || || | || | || | || || |||| | | || Sbjct 7773030 AGATGGGTGTCACCAGCTGTGGCCTTGACCTCAAAGATACCCTCCTCAATGGTAAGGAGG 7772971 Query 282272 GTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT--- 282328 | ||||||| ||| ||||| || | ||||| || || |||||| | || | Sbjct 7772970 GAAACATCAAAGGTACCACCTCCAAGGTCAAAGATGAGGACATTCTTCTCACCAACGCTG 7772911 Query 282329 -TGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTC 282385 ||| || || ||||||||||| |||| ||| ||||||||||| ||||| || || | | Sbjct 7772910 GTGGCCTTCTTGTCAAGACCATAGGCAATAGCTGCAGCAGTTGGCTCATTGATGATGCGC 7772851 Query 282386 AAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTA 282445 | ||||| ||||||||||| ||| ||||| || ||||| || || || || || || Sbjct 7772850 ATGACATTGAGACCAGCAATCACTCCAGCATCCTTGGTGGCCTGCCTCTGGGAGTCATTG 7772791 Query 282446 AAATATGCAGGAACAGTAATAACGGCAT 282473 || || ||||||||||| | |||||||| Sbjct 7772790 AAGTAGGCAGGAACAGTGACAACGGCAT 7772763 >seq4 Length=26741765 Score = 105 bits (116), Expect = 5e-17 Identities = 138/190 (73%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 282334 |||||| ||| || || |||| ||||| | ||| | || |||| |||| || | Sbjct 8680937 ACATCAAAGGTACCGCCTCCCAAGTCAAACACAAGAA---TCGTTTCGTTGTTTT---TC 8680884 Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || |||| |||||| |||| | |||||||| |||||||| ||||| | | ||| | Sbjct 8680883 TTCTCAAAACCATAAGCAAGGGATGCAGCAGTCGGTTCATTTATAATGCGGAGAACTTCC 8680824 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 | || ||||| | ||| |||||||| || ||| || ||||| || || || |||||| Sbjct 8680823 AATCCTGCAATACGTCCAGCATCTTTTGTTGCTGTCCTCTGTGAGTCATTGAAGTATGCA 8680764 Query 282455 GGAACAGTAA 282464 |||||||||| Sbjct 8680763 GGAACAGTAA 8680754 >seq5 Length=38039368 Score = 98.7 bits (108), Expect = 7e-15 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| | | ||||||||||||||||||||| || || ||| |||| ||| |||||| Sbjct 34737488 CCATAAGACAGAGCAGCAGCAGTTGGTTCATTGATGATCCTCTGGACATCAAGTCCAGCA 34737547 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || | || ||||| || || || || | || | ||| |||||||| || ||||| ||| Sbjct 34737548 ATGCGACCAGCATCCTTGGTTGCCTGACGCTGAGCATCATTAAAATAAGCTGGAACTGTA 34737607 Query 282464 ATAACGGCATCTGTTACTTCTTTTCCAATATAAG 282497 || ||||| | || || ||| |||| |||| Sbjct 34737608 ATCACGGCCTTTGAAACAGTTTTACCAAGGTAAG 34737641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740629810850712