Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq7 127 4e-24 seq9 125 1e-23 seq8 116 7e-21 seq5 107 4e-18 >seq7 Length=32884216 Score = 127 bits (140), Expect = 4e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||||| || || || ||||| || |||||||| | ||| | | || Sbjct 29193456 CGGAGGACAAGGTGCAAGGTGGACTCCTTCTGGATGTTATAATCCGCGAGAGTACGCCCA 29193397 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||| ||||| || | ||| || || ||||| || || ||||| Sbjct 29193396 TCCTCAAGCTGCTTGCCAGCGAAGATAAGGCGTTGCTGGTCCGGAGGGATGCCCTCCTTG 29193337 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || |||||||| || || ||||| |||||| |||| | || || ||||| || || Sbjct 29193336 TCCTGAATCTTAGCCTTCACATTGTCAATCATATCGGAGGACTCAACCTCCAAGGTGATG 29193277 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | ||||| || ||||||||||| Sbjct 29193276 GTCTTGCCAGTGAGGGTCTTAACGAATATCTGCAT 29193242 Score = 113 bits (124), Expect = 9e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | |||||| || || || ||||| || ||||| || | || | | || Sbjct 29194185 CGCAGGACAAGGTGCAGGGTGGACTCCTTCTGGATGTTATAGTCGGCAAGGGTGCGGCCA 29194126 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || || ||||| || | || || |||||||| || || |||||| Sbjct 29194125 TCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGGATGCCCTCCTTA 29194066 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || || || || || || ||| | || || |||| ||| || Sbjct 29194065 TCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCAGAGGACTCAACCTCCAGAGTGATG 29194006 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | ||||| || ||||||||||| Sbjct 29194005 GTCTTGCCAGTGAGGGTCTTCACGAATATCTGCAT 29193971 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | |||||| || ||||| || || || || || || | || | | || Sbjct 29193684 CGCAGGACAAGGTGCAGGGTGGATTCCTTTTGGATGTTGTAGTCTGCAAGGGTGCGGCCA 29193625 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||||||||| || | || || ||||| || ||||| ||||| Sbjct 29193624 TCCTCGAGCTGCTTCCCAGCAAAGATGAGACGCTGCTGGTCTGGTGGGATTCCCTCCTTG 29193565 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || ||||| || ||||| || | || || |||| || || Sbjct 29193564 TCCTGGATCTTGGCCTTCACATTATCGATCGTGTCGGAGGACTCGACCTCCAGGGTAATG 29193505 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | ||||| || ||||| ||||| Sbjct 29193504 GTCTTGCCGGTGAGGGTCTTCACGAATATTTGCAT 29193470 >seq9 Length=31548187 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | || || || | ||| || || || || ||||| || || ||||| | Sbjct 28421654 CCTCCCCTGAGGCGAAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGCG 28421713 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || |||||||| || ||||||||||| || | ||| || || || || Sbjct 28421714 AGGGTGCGGCCATCCTCTAGTTGCTTGCCAGCAAAGATGAGACGTTGCTGGTCAGGTGGA 28421773 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || |||||||| || || ||||| ||||| |||||| | || || Sbjct 28421774 ATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTGTCAATTGTATCAGAGGACTCAACC 28421833 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| || | ||||| ||||| |||||||| Sbjct 28421834 TCGAGGGTGATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 28421880 Score = 91.5 bits (100), Expect = 3e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || || || || ||||| || || ||||| | || | | || Sbjct 28897972 CGGAGCACCAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAATCCGCAAGGGTGCGGCCA 28897913 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||||||||| || | || || || || || || || ||||| Sbjct 28897912 TCCTCAAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTG 28897853 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || || || ||||| || || | || || || | || || Sbjct 28897852 TCCTGGATCTTCGCCTTCACGTTGTCAATAGTGTCGGACGACTCAACCTCAAGGGTAATG 28897793 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| ||||| || || |||||||| Sbjct 28897792 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 28897758 >seq8 Length=30429317 Score = 116 bits (128), Expect = 7e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | ||||| || || || ||||| || || ||||| | || | | || Sbjct 9002918 ACGGAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGTTGTAATCTGCTAAGGTGCGGCC 9002977 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || || || || ||||||||||| || | || ||||| || || || | ||||| Sbjct 9002978 ATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGATCCGGGGGAATGCTCTCCTT 9003037 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || ||||||||||||||||| || ||||| || || | || || |||| || || Sbjct 9003038 GTCCTGAATCTTTGCTTTTACGTTGTCAATTGTGTCTGACGACTCAACCTCCAGGGTAAT 9003097 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || ||||| ||||| ||||| ||||| || |||||| Sbjct 9003098 GGTTTTGCCGGTCAATGTCTTGACAAAGATTTGCATT 9003134 Score = 113 bits (124), Expect = 9e-20 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 |||||||| | ||| || || || || ||||| || || || |||| || Sbjct 25235083 CGCAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCNNNNNNNNNNCCA 25235024 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||||||||| || | || || || || || || || ||||| Sbjct 25235023 TCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGAATCCCCTCCTTG 25234964 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || |||||||| || || || ||||| |||||| || || || || | || || Sbjct 25234963 TCCTGGATCTTTGCCTTAACGTTGTCAATAGTATCAGAAGACTCAACCTCAAGGGTGATA 25234904 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| ||||| ||||| ||||| || ||||| Sbjct 25234903 GTCTTGCCAGTCAAGGTCTTGACAAAGATTTGCAT 25234869 >seq5 Length=38039368 Score = 107 bits (118), Expect = 4e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 82617 GATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCA 82676 || || ||||| || || || |||| || | || || || || || || || ||||| Sbjct 3286887 GACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCATCCTCCAGCTGCTTGCCAGCG 3286946 Query 82677 AAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACA 82736 ||||| || | || || || || || || || ||||||||||| ||||| || || ||| Sbjct 3286947 AAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTATCTTGGATCTTAGCCTTGACA 3287006 Query 82737 TTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTT 82796 || || || || ||| | || || || | || || |||||||| ||||| ||||| Sbjct 3287007 TTATCGATGGTGTCAGAGGACTCCACCTCGAGGGTGATAGTCTTGCCGGTCAATGTCTTC 3287066 Query 82797 ACAAATATCTGCAT 82810 ||||| |||||||| Sbjct 3287067 ACAAAGATCTGCAT 3287080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981827049044068