Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq8 105 2e-17 seq9 95.1 3e-14 seq7 93.3 1e-13 seq1 89.7 1e-12 seq6 86.0 1e-11 >seq8 Length=30429317 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || || || ||| |||| || || || || || Sbjct 25235328 CAGATCTTCGTCAAGACTCTCACTGGCAAGACCATTACTCTGGAGGTTGAGAGCTCCGAT 25235387 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || ||||| ||| || ||| || Sbjct 25235388 ACCATCGACAATGTGAAGGCTAAGATCCAGGACAAGGAAGGTATTCCCCCAGACCAGCAG 25235447 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||||||||| | || | ||||| |||||| | Sbjct 25235448 CGCCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGTACCCTCGCCGACTACAACATT 25235507 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| |||||||| || ||||| || Sbjct 25235508 CAGAAGGAGTCTACCCTCCACCTGGT 25235533 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || || || ||||| || || || | || || || |||||| Sbjct 9003358 CAGATTTTTGTCAAGACCCTGACCGGAAAGACCATTACGCTTGAGGTCGAGTCTTCTGAT 9003299 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| |||| || ||| |||||||| || || || || || |||||| || Sbjct 9003298 ACAATCGACAATGTGAAGGCGAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAGCAG 9003239 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| | || || ||| | || |||| || ||||| || Sbjct 9003238 CGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGACGCACCCTGGCTGACTACAATATC 9003179 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| |||||||| |||||||| || Sbjct 9003178 CAGAAGGAGTCTACCCTTCACCTAGT 9003153 Score = 89.7 bits (98), Expect = 1e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || |||||||| |||||||| ||||||| ||| |||||||||| || | ||| || || Sbjct 9003153 ACTAGGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCAGCCAGGGTGCGTCCGTCCTCG 9003212 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||| ||||||||||| || || || || Sbjct 9003213 AGCTGCTTGCCGGCGAAGATGAGGCGCTGCTG 9003244 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| ||||| || ||||| |||| Sbjct 3435712 AAGACCCTGACGGGGAAGACCATCACGCTGGAGGTGGAGTCCTCGGACACCATCGACAAC 3435771 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| || |||||| || | || |||||| Sbjct 3435772 GTGAAGGCCAAGATCCAGGACAAGGAAGGGATCCCCCCGGACCAGCAGCGCCTCATCTTC 3435831 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || || || | || | ||||| |||||| ||||||| ||||| Sbjct 3435832 GCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCC 3435891 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 3435892 ACCCTCCACCTCGT 3435905 >seq9 Length=31548187 Score = 95.1 bits (104), Expect = 3e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || || || || ||||| | || || || || ||| Sbjct 28897533 CAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACGCTTGAGGTCGAGTCCTCGGAC 28897592 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || || || |||||| || Sbjct 28897593 ACGATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAG 28897652 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| ||||| | || ||||| || |||||| || Sbjct 28897653 CGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCTTGGCTGACTACAACATC 28897712 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 ||||| ||||| || |||||||| ||| | || || Sbjct 28897713 CAGAAGGAGTCCACCCTTCACCTGGTTCTCAGGCT 28897747 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 204755 AGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTT 204814 || || | ||| |||||||| || ||||| ||||||| || ||||||||||| || | Sbjct 28897747 AGCCTGAGAACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTGCGG 28897688 Query 204815 CCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 ||||| ||||||||||| ||||||||||| || || || || Sbjct 28897687 CCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTG 28897647 >seq7 Length=32884216 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 |||||||| || || ||||| || || || |||||| |||| || || |||||| Sbjct 29193974 CAGATATTCGTGAAGACCCTCACTGGCAAGACCATCACTCTGGAGGTTGAGTCCTCTGAC 29194033 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || || || || ||| || Sbjct 29194034 ACCATCGACAACGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCTCCAGACCAGCAG 29194093 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| | || ||||| | || | ||||| || ||| || Sbjct 29194094 CGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTTGCCGACTATAACATC 29194153 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || |||||||| Sbjct 29194154 CAGAAGGAGTCCACCCTGCACCTTGT 29194179 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 |||||||| || || ||||| || || || ||||| ||||| || || || || Sbjct 29193245 CAGATATTCGTTAAGACCCTCACTGGCAAGACCATCACCTTGGAGGTTGAGTCCTCCGAT 29193304 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | || || ||| |||||||| || || || || || |||||| ||| Sbjct 29193305 ATGATTGACAATGTGAAGGCTAAGATTCAGGACAAGGAGGGCATCCCTCCGGACCAGCAA 29193364 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | ||||||||||| || |||||| | || ||||| | ||| | || ||||| ||| || Sbjct 29193365 CGCCTTATCTTCGCTGGCAAGCAGCTTGAGGATGGGCGTACTCTCGCGGATTATAACATC 29193424 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || | |||||||| Sbjct 29193425 CAGAAGGAGTCCACCTTGCACCTTGT 29193450 >seq1 Length=46529941 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || |||||||| |||| ||||| || ||||| |||| Sbjct 14154398 AAGACCCTGACGGGGAAGACGATCACGCTGGAGGTGGAGTCCTCGGACACCATCGACAAC 14154339 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || ||| ||| || | || |||||| Sbjct 14154338 GTGAAGGCGAAGATCCAGGACAAGGAGGGGATCCCGCCCGACCAGCAGCGGCTCATCTTC 14154279 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | || | ||||| |||||| ||||||| ||||| Sbjct 14154278 GCCGGCAAGCAGCTGGAGGACGGGCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCG 14154219 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 14154218 ACCCTCCACCTGGT 14154205 Score = 84.2 bits (92), Expect = 5e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGA-ATC 206243 || || || || || || || ||||| |||| ||||| || ||||| || | | | Sbjct 27877753 AAGACCCTGACGGGGAAGACCATCACGCTGGAGGTGGAGAGCAGCGACACGATCCAGAAC 27877812 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 | || || || | | || || || || || || ||||||| || | || ||||| Sbjct 27877813 ATCAAGGCGAAGG-TGCAGGACAAGGAGGGGATCCCGCCGGACCAGCAGCGGCTCATCTT 27877871 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||| |||||| |||| || || | || ||||||| |||||| ||||||| ||||| Sbjct 27877872 CGCCGGCAAGCAGCTGGAGGACGGGCGCACGCTGGCCGACTACAACATCCAGAAGGAGTC 27877931 Query 206364 TACTCTTCACCTTGT 206378 || || ||||| || Sbjct 27877932 GACGCTGCACCTGGT 27877946 >seq6 Length=37594838 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || ||||| || || ||||| ||||||| || |||||||||| || | ||| || ||| Sbjct 7379025 ACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGTCCGTCCTCC 7379084 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||| ||||||||||| ||||| || || Sbjct 7379085 AGCTGCTTCCCGGCGAAGATCAGCCGCTGCTG 7379116 Score = 84.2 bits (92), Expect = 5e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 206280 GCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGC 206339 ||||||| || | || ||||||||||| |||||| |||| ||||| | || |||| Sbjct 8552748 GCCGGACCAGCAGCGCCTCATCTTCGCCGGGAAGCAGCTGGAGGATGGCCGCACGCTGGC 8552807 Query 206340 CGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 ||| |||||| ||||||| ||||| || |||||||| || Sbjct 8552808 CGACTACAACATCCAGAAGGAGTCCACGCTTCACCTGGT 8552846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181820618295052