Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq4 277 5e-70 seq5 104 7e-18 >seq4 Length=26741765 Score = 277 bits (306), Expect = 5e-70 Identities = 257/326 (79%), Gaps = 0/326 (0%) Strand=Plus/Plus Query 20162 GGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTT 20221 ||||||| ||||| ||||| |||||||| ||||| || || |||||||||||||| ||| Sbjct 12116249 GGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTT 12116308 Query 20222 GGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTT 20281 || || || ||||||||||| ||| ||| ||||| |||||| ||||||||||| | Sbjct 12116309 GGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTG 12116368 Query 20282 GCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTT 20341 ||||| ||||| || ||||||||||||||| |||| || || || ||| ||||| || Sbjct 12116369 GCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTC 12116428 Query 20342 AATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGAT 20401 ||||| ||||| ||||| || ||||| || | | || | | | ||||| || ||| || Sbjct 12116429 AATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAAT 12116488 Query 20402 ACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAAT 20461 ||||||||||| || |||| ||||||||||| || | || || ||||| ||||| ||| Sbjct 12116489 ACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAAT 12116548 Query 20462 GCTCATAACTTCCCACTTGACCTTGC 20487 ||||| |||||||| || ||||| || Sbjct 12116549 GCTCACAACTTCCCTCTAGACCTAGC 12116574 Score = 268 bits (296), Expect = 3e-67 Identities = 307/405 (76%), Gaps = 6/405 (1%) Strand=Plus/Minus Query 19844 GAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCT 19903 ||||||||||| || | | || || || | ||||||||| |||||| || || ||| Sbjct 188885 GAGTGGGAACTGAGTTC-CATCTGGGTATACGTCCTTGGATTACTGTTGCATATTCAGCT 188827 Query 19904 CCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTC 19962 || |||||||| || | || || ||||| | | ||||| ||||||| || || ||||| Sbjct 188826 CCTGTTGCAGCTGCTACCGCTGT-TTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTC 188768 Query 19963 CGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGA 20022 |||| ||||||||| || || || |||| ||||||| ||| | |||||||| || || Sbjct 188767 TGATGGTATGCCTTTAGGAATATCTTGTACTTTCAACTTTATGATTGTATTCCAGGCAGA 188708 Query 20023 ACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTC 20082 |||||||| || ||||| || || |||||| | ||||| ||||||||||| | || || Sbjct 188707 GCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTATGCGGTTC 188648 Query 20083 ACTATTC-AGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGC-GTGAGACTACT 20140 |||||| ||||| ||||| ||||| | || || | || | |||| | | || || ||| Sbjct 188647 CCTATTCAAGTGCTATGCATGGTTCTTTGGTAACCT-CTAGTTTGTTCAGGGAAACCACT 188589 Query 20141 GAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATC 20200 ||| | ||| | || | ||||||| ||||| ||||| |||||||| ||||| || Sbjct 188588 GAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATT 188529 Query 20201 GTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCT 20245 || |||||||||||||| ||||| || || ||||||||||| ||| Sbjct 188528 GTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCT 188484 >seq5 Length=38039368 Score = 104 bits (114), Expect = 7e-18 Identities = 127/171 (74%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 20296 GGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTT 20355 ||||| | |||||||| |||| || || || || ||||| || ||||| ||||| || Sbjct 16640602 GGTAGAG-TTTGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAACGGGTT 16640544 Query 20356 CAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACAT 20415 ||| || ||||| || | | || | | | ||||| || ||| ||||||||||||| || Sbjct 16640543 CAATTTCAACCA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTTATACTTGGGCTGATAT 16640485 Query 20416 TCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCA 20466 |||| ||||| ||||| | | || || ||||| ||||| |||||||| Sbjct 16640484 CATCAACCGTGCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCA 16640434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148828778791896