Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq4 275 2e-69 seq5 98.7 3e-16 >seq4 Length=26741765 Score = 275 bits (304), Expect = 2e-69 Identities = 257/327 (79%), Gaps = 0/327 (0%) Strand=Plus/Plus Query 29290 GGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTT 29349 ||||||| ||||| ||||| |||||||||||||| || || |||||||| ||||| ||| Sbjct 12116249 GGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTT 12116308 Query 29350 GGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTT 29409 || || || ||||||||||||||| ||| || || |||||| ||||||||||| | Sbjct 12116309 GGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTG 12116368 Query 29410 GCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTT 29469 ||||| ||||| || ||||||||||||||| |||| || || || ||| ||||| || Sbjct 12116369 GCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTC 12116428 Query 29470 AATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAAT 29529 ||||| ||||| || || || ||||| || | | || | | | ||||| || |||||| Sbjct 12116429 AATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAAT 12116488 Query 29530 ACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAAT 29589 |||||||||||| | |||| || ||||| || || | ||||||||||| || |||||| Sbjct 12116489 ACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAAT 12116548 Query 29590 GCTCATAACTTCCCACTTGATCTGGCT 29616 ||||| |||||||| || || || ||| Sbjct 12116549 GCTCACAACTTCCCTCTAGACCTAGCT 12116575 Score = 219 bits (242), Expect = 1e-52 Identities = 294/404 (73%), Gaps = 4/404 (1%) Strand=Plus/Minus Query 28972 GAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCT 29031 ||||||||||| || | | || || || | || |||||| ||| ||||| |||||| Sbjct 188885 GAGTGGGAACTGAGTTC-CATCTGGGTATACGTCCTTGGATTACTGTTGCATATTCAGCT 188827 Query 29032 CCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGC 29091 || || ||||| || | || |||||| | | ||||| | |||||||| ||| Sbjct 188826 CCTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCT 188767 Query 29092 GACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAA 29151 || | |||||||| || || || | || ||||||| ||| | || ||||| || || Sbjct 188766 GATGGTATGCCTTTAGGAATATCTTGTACTTTCAACTTTATGATTGTATTCCAGGCAGAG 188707 Query 29152 CATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCG 29211 |||||||| || ||||| || || |||||| | || || ||||| || || | || || Sbjct 188706 CATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTATGCGGTTCC 188647 Query 29212 CTATTTA-GTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGTGC-GTGAGACGACTG 29269 ||||| | |||| ||||| ||||| | || || || | | |||| | | || || |||| Sbjct 188646 CTATTCAAGTGCTATGCATGGTTCTTTGGTAACCTC-TAGTTTGTTCAGGGAAACCACTG 188588 Query 29270 AAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCG 29329 || || ||| || | ||||||| ||||| ||||| |||||||||||||| || | Sbjct 188587 AAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTG 188528 Query 29330 TAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCT 29373 | |||||||| ||||| ||||| || || ||||||||||||||| Sbjct 188527 TGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCT 188484 >seq5 Length=38039368 Score = 98.7 bits (108), Expect = 3e-16 Identities = 126/171 (74%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 29424 GGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTT 29483 ||||| | |||||||| |||| || || || || ||||| || ||||| ||||| || Sbjct 16640602 GGTAGAG-TTTGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAACGGGTT 16640544 Query 29484 TAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGT 29543 || || ||||| || | | || | | | ||||| || ||| |||||||||||||| | Sbjct 16640543 CAATTTCAACCA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTTATACTTGGGCTGATAT 16640485 Query 29544 TCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCA 29594 |||| || || || || | | ||||||||||| || ||||||||||| Sbjct 16640484 CATCAACCGTGCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCA 16640434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146665579100152