Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq4 250 7e-62 seq5 93.3 1e-14 >seq4 Length=26741765 Score = 250 bits (276), Expect = 7e-62 Identities = 303/406 (75%), Gaps = 10/406 (2%) Strand=Plus/Minus Query 19063 GAGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCT 19122 ||||||||||| || | | || || || || ||||||||| |||||| || |||||| Sbjct 188885 GAGTGGGAACTGAGTTC-CATCTGGGTATACGTCCTTGGATTACTGTTGCATATTCAGCT 188827 Query 19123 CCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGG---TTCCTTT 19179 |||||||| || || | || || ||| | | || || |||||||||| || || | Sbjct 188826 CCTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCT 188767 Query 19180 AGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCT 19239 || | ||||||||| || || | |||| ||||||| ||| ||||||||||||| Sbjct 188766 ---GATGGTATGCCTTTAGGAATATCTTGTACTTTCAACTTTATGATTGTATTCCAGGCA 188710 Query 19240 GAACATAACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGG 19299 || ||||||||||| ||||| || || |||||| | ||||| |||||||| || |||| Sbjct 188709 GAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTATGCGGT 188650 Query 19300 TCACTATT-TAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGC-GTGAAACTA 19357 || ||||| ||||| ||||| ||||| | || || | || | |||| | | ||||| | Sbjct 188649 TCCCTATTCAAGTGCTATGCATGGTTCTTTGGTAACCT-CTAGTTTGTTCAGGGAAACCA 188591 Query 19358 CTGAAGAGGTATCTCAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACA 19417 ||||| | | |||| || | || |||| ||||| ||||| |||||||||||||| | Sbjct 188590 CTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATA 188531 Query 19418 TTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATTTTCCAGTACGC 19463 |||| || |||||||| |||||||| || | || ||||| || || Sbjct 188530 TTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGC 188485 Score = 244 bits (270), Expect = 3e-60 Identities = 264/350 (75%), Gaps = 0/350 (0%) Strand=Plus/Plus Query 19351 GAAACTACTGAAGAGGTATCTCAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAGACT 19410 ||||| |||||| | | |||| || | || |||| ||||| ||||| ||||||||| Sbjct 12116219 GAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACT 12116278 Query 19411 TATAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCTTC 19470 ||||| ||||| || |||||||| |||||||| || | || ||||| || || || Sbjct 12116279 TATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTT 12116338 Query 19471 AACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTT 19530 ||||| |||||| |||| ||||| ||||||||||||||||| || || |||||||| Sbjct 12116339 AACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTC 12116398 Query 19531 GCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCC 19590 | || | || | || || ||||| ||||| | || || || || || ||||| || Sbjct 12116399 ACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCT 12116458 Query 19591 CTTCTTGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAAC 19650 | |||| | | | ||||| || ||| ||||||||||||| || |||| |||||||| Sbjct 12116459 GTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAAT 12116518 Query 19651 CTCGGCTTTGAGGTAATGCACGAACGTAATGCTCATAACTTCCCACTTGA 19700 || || | || ||||||||||||||||||||||| |||||||| || || Sbjct 12116519 CTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGA 12116568 >seq5 Length=38039368 Score = 93.3 bits (102), Expect = 1e-14 Identities = 119/163 (73%), Gaps = 1/163 (1%) Strand=Plus/Minus Query 19523 TTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTGAATGGCTTTAACTTTA 19582 ||||||| | || | || | || || ||||| ||||| | || || || || || | Sbjct 16640595 TTTGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAACGGGTTCAATTTCA 16640536 Query 19583 ACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATC 19642 |||| || | |||| | | | ||||| || ||| ||||||||||||| || |||| | Sbjct 16640535 ACCA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTTATACTTGGGCTGATATCATCAACC 16640477 Query 19643 GTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCA 19685 |||| || || | | || ||||||||||||||||||||||| Sbjct 16640476 GTGCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCA 16640434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141148779886296