Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq4 275 7e-69 seq1 120 3e-22 seq5 105 7e-18 >seq4 Length=26741765 Score = 275 bits (304), Expect = 7e-69 Identities = 277/360 (77%), Gaps = 0/360 (0%) Strand=Plus/Plus Query 160587 GAAACGACTGAAACAGAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAGGAAGAGACC 160646 ||||| ||||||| || || || | ||||| | || ||||||||||||||||| Sbjct 12116219 GAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACT 12116278 Query 160647 TACAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTC 160706 || || || || || || |||||||| || || || || |||||||||||||| || Sbjct 12116279 TATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTT 12116338 Query 160707 AACAACTCCCGTTCACTTCACTTCTTCCTGGCAGCATGGCCTGTAGTCGGAATCTGGTTC 160766 |||||||| ||||| | ||||||||| |||| || ||||||||||| || || |||||| Sbjct 12116339 AACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTC 12116398 Query 160767 ACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCC 160826 |||||| | ||| |||| || ||||| ||||| || ||||| ||||| |||||||| || Sbjct 12116399 ACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCT 12116458 Query 160827 ATCCTCGATGGTCAAGGTCGTGTACTGAACACCTGGGCAGACGTACTGAATCGTGCTGGT 160886 | | ||| | |||||||| || | || || ||||| || | | || |||||| | Sbjct 12116459 GTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAAT 12116518 Query 160887 CTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTCGCTGCT 160946 |||||||||||||| ||||| || ||||| || ||||||||||| || ||||| |||||| Sbjct 12116519 CTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 12116578 Score = 228 bits (252), Expect = 9e-55 Identities = 296/404 (73%), Gaps = 4/404 (1%) Strand=Plus/Minus Query 160298 TGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGC 160357 |||||||||||| | || | | ||||| || || ||||| ||| |||||||| || Sbjct 188886 TGAGTGGGAACTGAGTT-CCATCTGGGTATACGTCCTTGGATTACTGTTGCATATTCAGC 188828 Query 160358 TCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTC 160417 ||| || || || || | ||||| ||| | | || ||| | |||||||| |||||| Sbjct 188827 TCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTC 188768 Query 160418 CGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGA 160477 |||| ||||||| | || || ||| ||||||| |||| ||| |||||||||| ||||| Sbjct 188767 TGATGGTATGCCTTTAGGAATATCTTGTACTTTCAACTTTATGATTGTATTCCAGGCAGA 188708 Query 160478 ACACAATATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATC 160537 || || |||||||||||||| || |||||| | || || ||||| ||||| | || || Sbjct 188707 GCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTATGCGGTTC 188648 Query 160538 TTTGTTC-TCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACT 160595 | ||| ||||||||| || | | || || | || | |||| | ||||| ||| Sbjct 188647 CCTATTCAAGTGCTATGCATGGTTCTTTGGTAACCT-CTAGTTTGTTCAGGGAAACCACT 188589 Query 160596 GAAACAGAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATC 160655 |||| || || || | ||||| | || ||||||||||||||||| || || || Sbjct 188588 GAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATT 188529 Query 160656 GTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGC 160699 || || || |||||||| || || || || |||||||||||||| Sbjct 188528 GTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGC 188485 >seq1 Length=46529941 Score = 120 bits (132), Expect = 3e-22 Identities = 137/182 (75%), Gaps = 3/182 (2%) Strand=Plus/Minus Query 161688 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 161747 ||||| || | ||||||||| | | |||| ||||| |||||||| || |||||||| Sbjct 26428812 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGC 26428753 Query 161748 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACAACTTTC 161807 || | ||| |||| ||||||| | ||| | || |||||| |||| || |||||||| Sbjct 26428752 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 26428693 Query 161808 GCAACGAGCTGGTATACCCATGGTCTCGCTAGTTCCTATCTTG-AGGGTGCAAACTTTCT 161866 | ||| |||||||||||||| | || ||||||||| | | ||| ||||| ||||| Sbjct 26428692 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA--TTTCT 26428635 Query 161867 TA 161868 || Sbjct 26428634 TA 26428633 >seq5 Length=38039368 Score = 105 bits (116), Expect = 7e-18 Identities = 123/165 (75%), Gaps = 1/165 (1%) Strand=Plus/Minus Query 160761 TGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAAC 160820 |||||||||||| | ||| |||| || ||||| ||||| || ||||| ||||| |||||| Sbjct 16640593 TGGTTCACTGCTTTAGGTATTAGGACTATGGCTTTCAATCTAAACGGGTTCAATTTCAAC 16640534 Query 160821 CAGTCCATCCTCGATGGTCAAGGTCGTGTACTGAACACCTGGGCAGACGTACTGAATCGT 160880 || || | | ||| | |||||||| || | | || ||||| || | | || ||| Sbjct 16640533 CA-TCTGTAGTTGATAGCCAAGGTCGCGTTATTTATACTTGGGCTGATATCATCAACCGT 16640475 Query 160881 GCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAAC 160925 || ||||| ||||||||| ||||| || ||||| || ||| || Sbjct 16640474 GCAAATCTTGCTATGGAAGTAATGCACGAACGTAATGCTCACCAC 16640430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559503916074400