Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq4 257 2e-63 seq1 105 8e-18 >seq4 Length=26741765 Score = 257 bits (284), Expect = 2e-63 Identities = 301/404 (75%), Gaps = 2/404 (0%) Strand=Plus/Minus Query 181319 TGAATGGGAACTCTCTTACCGCTTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGC 181378 ||| |||||||| || | || ||||| || || ||||| ||||||||| || || Sbjct 188886 TGAGTGGGAACTGAGTTCCATCTG-GGTATACGTCCTTGGATTACTGTTGCATATTCAGC 188828 Query 181379 TCCAGTCGCAGCAGCATCTGCTGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTC 181438 ||| || ||||| || | ||||| ||| | | || ||| | |||||||| |||||| Sbjct 188827 TCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTC 188768 Query 181439 TGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGA 181498 ||| | ||||| | || || ||| |||| ||||||| ||| |||| ||||| ||||| Sbjct 188767 TGATGGTATGCCTTTAGGAATATCTTGTACTTTCAACTTTATGATTGTATTCCAGGCAGA 188708 Query 181499 GCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTC 181558 ||| ||||| || |||||||| || |||||||| ||||| || |||||||| | ||||| Sbjct 188707 GCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTATGCGGTTC 188648 Query 181559 ACTGTTCA-GTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTG 181617 || |||| |||| ||||| ||||||||||| || ||| | || | || || |||| Sbjct 188647 CCTATTCAAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGTTCAGGGAAACCACTG 188588 Query 181618 AAACTGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATACAACATCG 181677 ||| || || || | ||||||| || || ||||| |||||||| || || || | Sbjct 188587 AAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTG 188528 Query 181678 TCGCCGCCCACGGTTACTTTGGTCGCTTGATCTTCCAATATGCT 181721 | ||||| || ||||| ||||| || || ||||||||||||||| Sbjct 188527 TGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCT 188484 Score = 228 bits (252), Expect = 1e-54 Identities = 248/329 (75%), Gaps = 0/329 (0%) Strand=Plus/Plus Query 181638 GGTTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCCCACGGTTACTTT 181697 ||||||| || || ||||| |||||||| || || || || ||||| || ||||| ||| Sbjct 12116249 GGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTT 12116308 Query 181698 GGTCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTC 181757 || || || ||||||||||||||| || |||||||| ||||| | ||||||||| | Sbjct 12116309 GGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTG 12116368 Query 181758 GCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTT 181817 || || ||||||||||| || || |||||||| || | || | || || ||||| || Sbjct 12116369 GCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTC 12116428 Query 181818 AACCTCAATGGATTCAACTTCAACCAGTCTATCCTCGACGGACAAGGACGTGTCCTCAAC 181877 || || || |||||||| |||||||| ||| | | || | ||||| || || | || Sbjct 12116429 AATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAAT 12116488 Query 181878 ACCTGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAAC 181937 || ||||| || | |||||||||| ||| || |||||||| |||||||| || || Sbjct 12116489 ACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAAT 12116548 Query 181938 GCGCACAACTTCCCGCTTGATCTTGCAGC 181966 || ||||||||||| || || || || || Sbjct 12116549 GCTCACAACTTCCCTCTAGACCTAGCTGC 12116577 >seq1 Length=46529941 Score = 105 bits (116), Expect = 8e-18 Identities = 136/185 (74%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 182371 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 182430 ||||||||||| | | |||| || ||||| ||||| || |||||||| || | ||| Sbjct 26428802 TGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGCCTATTGCTTT 26428743 Query 182431 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 182490 |||| ||||||| | || | || |||||| |||| |||||| ||||||| || || Sbjct 26428742 TTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTT 26428683 Query 182491 GGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTT-ACGGCAGCT 182549 |||| ||||| || | || ||||||| | |||||| || |||||| || ||||| Sbjct 26428682 GGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA-TTTCTTAACCGCAGCA 26428624 Query 182550 GTCTC 182554 || || Sbjct 26428623 GTTTC 26428619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614617507807360