Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq4 221 2e-52 seq1 87.8 3e-12 >seq4 Length=26741765 Score = 221 bits (244), Expect = 2e-52 Identities = 241/320 (75%), Gaps = 0/320 (0%) Strand=Plus/Plus Query 175125 GGTTACAAGTTCGGCCAAGAAGAAGAGACCTATAACATCGTGGCAGCCCATGGCTACTTC 175184 ||||||| || || ||||| |||||||| ||||| || ||||| || ||||| || || Sbjct 12116249 GGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTT 12116308 Query 175185 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCACGCTCACTCCACTTCTTCTTA 175244 || || || ||||||||||| ||| || |||||||| || || | ||||||||||| Sbjct 12116309 GGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTG 12116368 Query 175245 GCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTTTCCACAATGGCATTC 175304 || || ||||| || || || || |||||||| || | ||| || || ||||| ||| Sbjct 12116369 GCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTC 12116428 Query 175305 AACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGACGGACAAGGTAGAGTATTGAAC 175364 || || || || ||||| |||||||| ||||| | || | |||||| | || | || Sbjct 12116429 AATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAAT 12116488 Query 175365 ACCTGGGCGGATGTTCTTAACAGAGCTGGTCTTGGGATGGAAGTAATGCATGAGAGAAAT 175424 || ||||| ||| | | ||| | ||| |||||| |||||||||||||| || | ||| Sbjct 12116489 ACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAAT 12116548 Query 175425 GCACACAACTTCCCACTAGA 175444 || ||||||||||| ||||| Sbjct 12116549 GCTCACAACTTCCCTCTAGA 12116568 Score = 203 bits (224), Expect = 5e-47 Identities = 289/404 (72%), Gaps = 2/404 (0%) Strand=Plus/Minus Query 174806 TGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTAGCATACTCTGC 174865 |||||||||||| || | | | ||||| | |||||||| ||| ||||| || || Sbjct 188886 TGAGTGGGAACTGAGTTC-CATCTGGGTATACGTCCTTGGATTACTGTTGCATATTCAGC 188828 Query 174866 ACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCATTCTC 174925 || |||||||| ||| | || || ||| | | || ||| | |||||||| ||||| Sbjct 188827 TCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTC 188768 Query 174926 AGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGTCTTCCAAGCAGA 174985 || | ||||| || || || ||| | || ||||||| ||| | || ||||| ||||| Sbjct 188767 TGATGGTATGCCTTTAGGAATATCTTGTACTTTCAACTTTATGATTGTATTCCAGGCAGA 188708 Query 174986 ACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTCTTCGGTGGTTC 175045 ||||||||| | ||||| || || |||||||| || || || ||||| || | ||||| Sbjct 188707 GCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTATGCGGTTC 188648 Query 175046 ATTGTTCTCA-GCGATGCATGGTTCACTTGTTACCTCTTCACTTGTCCGTGAGACAACTG 175104 | ||| || ||||||||||| | || |||||| | || | || || |||| Sbjct 188647 CCTATTCAAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGTTCAGGGAAACCACTG 188588 Query 175105 AAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGACCTATAACATCG 175164 ||| || || || | ||||||| || || ||||| |||||||| ||||| || | Sbjct 188587 AAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATTG 188528 Query 175165 TGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCT 175208 |||| || ||||| || || || || || ||||||||||| ||| Sbjct 188527 TGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCT 188484 >seq1 Length=46529941 Score = 87.8 bits (96), Expect = 3e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 175853 TGATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGGTCTGGATT 175912 ||||||| |||| |||||| | | || || | ||| | ||| | || |||||||| | Sbjct 26428810 TGATATTATGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGCCT 26428751 Query 175913 ACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGT 175972 | | ||| |||| ||||||| | || | || || ||| |||| || ||||||||||| Sbjct 26428750 ATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGT 26428691 Query 175973 CACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGGT 176018 || |||||| |||||||| | || ||||||| | || ||| Sbjct 26428690 AACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGT 26428645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729929490510560