Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq4 233 2e-56 seq1 111 2e-19 >seq4 Length=26741765 Score = 233 bits (258), Expect = 2e-56 Identities = 298/405 (74%), Gaps = 4/405 (1%) Strand=Plus/Minus Query 178187 TGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGC 178246 |||||||||||| | || | | ||||| || || ||||| ||| ||||| || || Sbjct 188886 TGAGTGGGAACTGAGTT-CCATCTGGGTATACGTCCTTGGATTACTGTTGCATATTCAGC 188828 Query 178247 TCCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTC 178306 ||| || ||||| || | || || ||| || | || ||| | |||||||| || || Sbjct 188827 TCCTGTTGCAGCTGCTACCGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTC 188768 Query 178307 TGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGA 178366 ||| | ||||| | || || ||| |||| ||||||| ||| |||| ||||| ||||| Sbjct 188767 TGATGGTATGCCTTTAGGAATATCTTGTACTTTCAACTTTATGATTGTATTCCAGGCAGA 188708 Query 178367 ACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTC 178426 || ||||| || ||||| || || |||||||| ||||| || |||||||| | ||||| Sbjct 188707 GCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTATGCGGTTC 188648 Query 178427 ACTGTTCA-GTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTC-GTGAAACGACT 178484 || |||| |||| ||||| ||||||||||| || ||| | |||| | ||||| ||| Sbjct 188647 CCTATTCAAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTT-GTTCAGGGAAACCACT 188589 Query 178485 GAAACAGAATCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACATACAACATC 178544 |||| ||||| || | ||||| | || || ||||| |||||||| || || || Sbjct 188588 GAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACTTATAATATT 188529 Query 178545 GTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCT 178589 || || || ||||| || || || || || ||||||||||||||| Sbjct 188528 GTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCT 188484 Score = 219 bits (242), Expect = 5e-52 Identities = 264/359 (74%), Gaps = 0/359 (0%) Strand=Plus/Plus Query 178476 GAAACGACTGAAACAGAATCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACA 178535 ||||| ||||||| ||||| || | ||||| | || || ||||| |||||||| Sbjct 12116219 GAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACT 12116278 Query 178536 TACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATTC 178595 || || || || || || ||||| || || || || || ||||||||||||||| || Sbjct 12116279 TATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTT 12116338 Query 178596 AACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTC 178655 |||||||| ||||| | ||||||||| | || || ||||||||||| || || |||||| Sbjct 12116339 AACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTC 12116398 Query 178656 ACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCC 178715 || || | || | || || ||||| || || || || |||||||| |||||||| || Sbjct 12116399 ACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCT 12116458 Query 178716 ATCCTCGACGGACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGGT 178775 | | || | ||||| || || | || || ||||| || | |||||||||| | Sbjct 12116459 GTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAAT 12116518 Query 178776 CTCGGCATGGAAGTCATGCACGAGCGCAACGCGCACAACTTCCCGCTTGATCTTGCAGC 178834 || || |||||||| |||||||| || || || ||||||||||| || || || || || Sbjct 12116519 CTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGC 12116577 >seq1 Length=46529941 Score = 111 bits (122), Expect = 2e-19 Identities = 137/185 (74%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 179233 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179292 ||||||||||| | | |||| || ||||| ||||| || |||||||| || | ||| Sbjct 26428802 TGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGCCTATTGCTTT 26428743 Query 179293 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179352 |||| ||||||| | || | || |||||| |||| |||||| ||||||| || || Sbjct 26428742 TTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTTGTAACTTCTT 26428683 Query 179353 GGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTT-ACGGCAGCT 179411 |||| ||||| || | || ||||||||| | || ||| || |||||| || ||||| Sbjct 26428682 GGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA-TTTCTTAACCGCAGCA 26428624 Query 179412 GTCTC 179416 || || Sbjct 26428623 GTTTC 26428619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 606009509098560