Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryza_20glumipatula_20[genbank_20GCA_5F000576495.1_202014-02-26] 12 sequences; 372,860,283 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq4 248 1e-60 seq1 123 3e-23 >seq4 Length=26741765 Score = 248 bits (274), Expect = 1e-60 Identities = 271/360 (75%), Gaps = 0/360 (0%) Strand=Plus/Plus Query 159006 GAAACGACTGAAACAGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACA 159065 ||||| ||||||| || || || | ||||||| || || ||||| ||||| || Sbjct 12116219 GAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAGACT 12116278 Query 159066 TATAATATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTC 159125 |||||||| || || || |||||||| || || || || ||||||||||| ||| || Sbjct 12116279 TATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTT 12116338 Query 159126 AACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTC 159185 |||||||| ||||| || ||||||||| | ||||| |||||||| || || || |||||| Sbjct 12116339 AACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTC 12116398 Query 159186 ACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCC 159245 || || | || | || ||||| ||||| || ||||| ||||| |||||||| || Sbjct 12116399 ACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCT 12116458 Query 159246 ATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGTGCAGGT 159305 | ||||| | || ||||| || | || || ||||| ||| | | |||||||| | Sbjct 12116459 GTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAAT 12116518 Query 159306 CTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCT 159365 || ||||||||||| ||||| || ||||| || ||||||||||| || ||||| |||||| Sbjct 12116519 CTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCT 12116578 Score = 224 bits (248), Expect = 1e-53 Identities = 280/380 (74%), Gaps = 3/380 (1%) Strand=Plus/Minus Query 158742 GGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCATCTGCTGTA 158801 ||||| || || ||||| ||| |||||||| || || || || || || | ||||| Sbjct 188862 GGTATACGTCCTTGGATTACTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACCGCTGTT 188803 Query 158802 TTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCT 158861 ||| | | || ||| | |||||||| |||||| |||| ||||||| | || || ||| Sbjct 188802 TTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCT 188743 Query 158862 GGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTC 158921 ||||||| |||| ||| |||||||||| ||||| || |||||||||||||| || || Sbjct 188742 TGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTT 188683 Query 158922 CATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTC-TCTGCTATGCATGGAAG 158980 || ||| | ||||| ||||| ||||| | || || || ||| |||||||||||| Sbjct 188682 CACATGTTAGGTGTAGCTGGTGTATTATGCGGTTCCCTATTCAAGTGCTATGCATGGTTC 188623 Query 158981 TCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTATGGTT 159039 | | || || | || | |||| | ||||| ||||||| || || || | |||| Sbjct 188622 TTTGGTAACCT-CTAGTTTGTTCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTT 188564 Query 159040 ACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCATGGTTACTTCGGTC 159099 ||| || || ||||| ||||| || |||||||| || || || |||||||| || || | Sbjct 188563 ACAGATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCC 188504 Query 159100 GTTTGATCTTCCAATACGCT 159119 | || ||||||||||| ||| Sbjct 188503 GATTAATCTTCCAATATGCT 188484 >seq1 Length=46529941 Score = 123 bits (136), Expect = 3e-23 Identities = 138/182 (76%), Gaps = 3/182 (2%) Strand=Plus/Minus Query 159899 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 159958 ||||| || | ||||||||| | | |||| ||||| |||||||| || |||||||| Sbjct 26428812 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTTGTTTTTGTAGGATGGTCTGGC 26428753 Query 159959 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTTC 160018 || | ||| |||| ||||||| | ||| | || |||||| |||| || |||||||| Sbjct 26428752 CTATTGCTTTTTCCTTGTGCTTATTTCGCTTTAGGAGGTTGGTTTACAGGGACAACTTTT 26428693 Query 160019 GCAACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTG-AGGGTGCAAACTTTCT 160077 | ||| ||||||||||||||| | || ||||||||| | | ||| ||||| ||||| Sbjct 26428692 GTAACTTCTTGGTATACCCATGGATTGGCGAGTTCCTATTTGGAAGGTTGCAA--TTTCT 26428635 Query 160078 TA 160079 || Sbjct 26428634 TA 26428633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552473517128960